MmuINT0113257 @ mm9
Intron Retention
Gene
ENSMUSG00000030162 | Olr1
Description
oxidized low density lipoprotein (lectin-like) receptor 1 [Source:MGI Symbol;Acc:MGI:1261434]
Coordinates
chr6:129435266-129438217:-
Coord C1 exon
chr6:129438102-129438217
Coord A exon
chr6:129437826-129438101
Coord C2 exon
chr6:129435266-129437825
Length
276 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTTTTTCTATCTACCTGCAGCTT
3' ss Score
11.43
Exon sequences
Seq C1 exon
ACATTCATCTTACAAGCAATTTCCCATACCACCTCCCCGTTCTGGATTGGATTGCATCGGAAGAAGCCTGGCCAACCATGGCTATGGGAGAATGGAACTCCTTTGAATTTTCAATT
Seq A exon
GTAAGTCTACTACTCCTCTTGGTGGCCATTTTGAGTGTTCTATTCCTGTCTGGACCTGCTTGGAAGTCCCTGTCATAGTCCACCTATGTCCTCTTCTTGTCAGAATGAAGAGTGGGAAATACACTAAAATGACAAGAGGGTTTGTCATCTGCCCCTTCTTCATACCTTGCTGGCATTTTCTTTCACAGTTCTGCTGATTTAAAGCTTTGAGACAGGGTTGATTTCTAACATAAAGATGATATATGTCCTGTTTTATTTTTTTCTATCTACCTGCAG
Seq C2 exon
CTTTAAGACCAGGGGCGTTTCTTTACAGCTATATTCATCAGGCAACTGTGCATACCTTCAAGACGGAGCTGTGTTCGCTGAAAACTGCATTCTAATTGCATTCAGCATATGTCAGAAGAAGACAAATCATTTGCAAATTTAGTGAATCTAAAGATTCTGGAGAAGACCATGAGAAGACTTTTGACTGTCGCTCTGAAATTTAAGCTATTCTTTATTACCTGCATGTAAAGCATGTTGGCCTTGACATCTGTCAGTTACCTGATAGCTACAGTTCACCTCAACAAAGACAAGGACCAGAAGCAAATACTGGTGGATCCAGATGTTTGAAATCTTTGTATCAAAACGTGTGAGTTCAATTGTTTATCCATATACACTGGCCTTGCCCCTCCAAAGTCTCCCAACCAACCTGCAATCCTTCTTCCCCTTCGTGTTTTAAATGATGCTTCCTGCCTGACCTGGCCATGCTTTGTACTCAGTCTCCTCTACCTCAGTATGCCTCCTGTTGCCGCATGAAAGACAGGATGTAGAAATCCTCCTCAAGTGCAGGCAGAGGGCTCAAAGGCAAAGCTCGTCCGAGAAATAACATGCAAAGAAACAGAACTGGAAAAACTACACTGCAAACAGGAACTCATGATCTCTAAAAAGCCATGGCTTGATCTTTATGACAGGAGTCCATCTCCAGACTGCACTTTTACACACATATTTTTTATTTTCCTTTTATTGTAAGTTTATGGATAGTTTGCCTACTTGAATTCTGTGTACCACATGAGTGCCTGGTGCCACTGAAGATCAGAAGAGGACATCAGATTCTCTGGATCTGGAATTGCAGATGGTTGTAAGCTGCTATGTAGATGTGAAGAATTGAATTCGTGTCCCCTGGAAGAACAGCCAGTACTCTTTGCCATGAGCTATCTCTCAAGCTCCTGTGATCAATTCTTGTATCAGTTATGTCTCCATTTTTGCTCTACCAAAGAACAGTGTTATAACTTTAAAACAGTAAGTATTTTCATTATTCTAGGGGTATTATAGCAGATATATAGATATAGATATAGATGATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTATGCTAGATACATCCTTGAGAAGATGAGACAGTTTTGTGTGAAATGAGTTTGTAATAATCCAAATTTAAAAATAAATTCGATGATTACCTGTAGTGGTCATATTACCACAGCTAAGATGATGAACATACCTGTCACTTCTGCCCCTTTCCAAAGCCTCCCCCCTAAAACAAACACCAATCTGCTTTCAGTTCGCATTTTATAGAGCTTATCATTTTGTTTTTAAGACAGAATCTCATTATATAGTTCTGGCTGGCCTGGAACTCACTACACAGAGCAGGCTGGCCTCCACCTTCTAGAGCTCCTCCTGCCAGACTCCCAAACCTTAAGACTGAAGGAGTGCCCTGCCATGTGTGACTCAAACACCTTAATGTGAATGGAATAGCATAAGATGTCCAGGTTTTTTCAGTCCAGCTTCTTCCACTTGGTACAATTTTTAATTTTTGTGTTCATACATCTCCACCACAGTGTTTGTATCAGTTCATCATTCTTTTCAAATGTTGAGCCTTCCCCTGTGGATCTATAGTGTCATTTGTTATCTGTGTATTTGTTGATGCGATTTGGGTTGTTTTTATTTGGGGTCACCTACAAATAAAGCTGCTATGGATGTCCATGGACAAGGCTAATATCTTAGGTAAGCACCTACGAGTAAGATGCTTGGGTCATTCAGTGTGGGAATATATGGTTGGCTATTTTAACCATTCCTGTTTGAAAACATTAATTTTTTTATTTTTGAAATCAATTTTTTAAAAAATTAGTCTATTTTACATCTCAACCCCAGTTTCTCTTCCTCCTCTCCTCTCAACCTTCTCCCACCTTCTCTCCCTGACCCCATCCACCCCTCCTCCCTTTCTCTCCAGAAGAGGGGAGGCCTCCCATGGATGCCAACCAGCCTCAGCATCTCAAGTTACAGTAAGAATAGGTTTGTCTTCTCTTGTGAAAATCTTAATTTTTAGATTTATCTATTATATATGCAGTACTTTGCTTGCACATATGTATTGGTACCATGTACATGAATGGTACCAGAGAAAGTCAGAAGAGGCCATTGTATTTTCTGGGACTGGAATTACAGACGGTTTTGAACAATCCTATAGACTCTGGGAACTGAACCCAGGTCCTCTGGAAAGGCAAGCAGTGCTCTTAACCCCTGAGCCATTTCTTCTGGCCTTTTAGCAATTTTTATTAATATATAACTGTGTATAATTGCACTTTTAGCTCAAAGTTCTTAAGTGTCAAATAGTCTTGGATTTATTTTCATGTTATCACTGTCTGTACAATTTCTGTGATGAAATAACTGAGCATATATTTTGAGAATTTGGTTTTCTTAAATTTTAAATCTGAAGGATTTACATATTTGAGAATAAAAACCAGCCAGATATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030162-Olr1:NM_138648:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(37.1=81.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAGCCTGGCCAACC
R:
AGATGTCAAGGCCAACATGCT
Band lengths:
307-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: