MmuINT0113987 @ mm9
Intron Retention
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:53510318-53514723:+
Coord C1 exon
chr7:53510318-53510463
Coord A exon
chr7:53510464-53514590
Coord C2 exon
chr7:53514591-53514723
Length
4127 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TGGCCCTTTGTTTTCTCTAGAAC
3' ss Score
9.95
Exon sequences
Seq C1 exon
CTGAGTGCTCAGTGACTGGTGACATTCACTTCACGACCTTTGATGGACGCCGGTACACATTCCCTGCCACGTGTCAGTACATCCTCGCCAAGAGCCGTTCCTCAGGCACATTTACAGTGACGCTGCAGAACGCCCCGTGTGGCCTG
Seq A exon
GTAAGGCTGGGTGGGTCTCCATGTTCAAACAAGCCTCCCACAGATCAGGGTCTTCCCATGTCTCAGCTGTTGTCTCTTCCTGGGACACAGAACTGGTTCCAGAAACAGTTCAAGCCCAGGCCCTCTGCTGCCTGAGTCTCTAGAGCCGGTCTAACTCTACTTAGCTTTCTATGCTTTGTTTGTTTGTCTTTTTCTATGTCTGGAAGGCCTACTCGATCAATTCATTCATCAAATTCATCAGATTCTGTTGGGGGCAGAAGCTGTGCTGAGCTCTGACATTGCTTTGTCTGTCAGACCTCATAGCTTAGTGGGCCAGACAGGCAAGCAGACCCAAGACCCACTGTGGGGGGTGTGGATGGGGCAGGGTGGGAAGACTTTTCCTTTTACCTGGGCATTGGTAGCAGGGGCAAAGGGGATCAGGAGGTGACCCCTGAGCTGTGCCAGTCACCTGAGAACAATGCAGAGACACTGGCTGTAGGTCAGGTGTGCATTTGTCTGTCTCAGTGGAGACTGTATTGTCCCTGGACTGACTATGCTGAGGCCCTGGTGTGGGCTGTGCCCAAGCTCCTTTCTGCAGCGTAGAACCAGCACTTTATGCCCAGCCAGGATGCCAGGCCCACCCTGCATGTCTACTCTGCTCCAGCCCCAGACTCTAGGACTTTGAATGTGAGCAGACCCCAGCTAGGTCTGGGGACACAGTCTGGGAACGGTGGATGAGGCAGAGGCTGGCTTTCTTCTTTTGCTCTGAGCTGTGGGGCAGCAGGTACTGGGGAATAAAGGGGGTGGGAGAGAACCCGCATCCCGCCAGAGTTCTGGTGCTCTGGGCAGGTGGATGCAGAGGATGGCTGTGTGTTCTCCATGCAGCCCCTGGTGGGTGTCTGGCTGTGTGAAGCCATGGACCCAGTCGGCAGGAGGGTGAACAAGGGGCAGTCTGAGGTCTCGGGGCCTCACGGAGGCCAGAGATAACAGGTTCTCATTCTCAAACATCCCAGACTCCGCTGTATGTCACGGAAGAGCTGAGAACAAAGTGGGGGCTCCAGGGGTAGCTTGGTCATCCCCAAAGCCAAAGAGAGGAGAGGGCAGGGAGAGAGGGGGTACTGGGTGGTTCCTATGTGGGTGAGAGTCCTTGGTTCGGTCTGTGGCTGGAGCACAGAAAGTCCTTCTGGCAGGAGGTTATATGCAGCTCTTTAGGGGAAAGCCTATTCCAGCGTTCAAGCACGGAGGGCCTTGATGAACAGTGATGGTCTATGGTTTTTAGAACTTTATTGTAGAAAGGCAGAGAGAGAGAGAGAGAGAGAGAAGGTAAAAAGAGAGAGGCCGGCCATGGCCACGTGGAGAAAGGGGGGAAGGGAGAGGGAAAAGGAGAGCTAGAGATGAGAATAAGAAAGGTGAGAGCTGCTGGGCGTGGGGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTATCTCAAAAAACAAAAAACAAAAAACAAACAAACAAACAAAAACCCAAACAAAAACAAACAAAAAACAAAACAAAAAAAAGAAAGGTAGGAGCTCAAGAGAGAGAGGAGGGGCCAAGCAGCCCCTTTTATAGTGGTCTGGGCTGTCTTGTAGTTGCAGGGTAGCTGTGGGGAGGAGCATACCTGGCTATTGTCAGGTAACTGTGAGGGTGGAGTCTAGCTAGAATGTCAGGAGCTTGGGGGTTTGTCTGCATGACTGGTAGTCACAGAATTATGAAGTTGGGGGCTCTGTGGTGTCAGGCACCTGCCTCTGGGAACGTGGCTCACTGTTCCACCCCTTGTAGAGTTTTCTACTGGGTCTCCGGAGCAAGCCTCGCTCAACCAAAACAGGCTGCCTTTCACCGTCCCACATTGAGTGACCTCTTTTCTTTCTCTGTCATAGTCCCTTCTCAGCTGTTCTCCACGCAGGGGACTGTCTTCCAAGATGGTCACTTCTGTTGCATCTTGAATGTGGGAACAAAGAGGGGTGACAGAAAGGCAGAGCAGCTCCCACTTCTCCCATTCATGCGGCTCAAGAGCCCCAGAGCACATGAGAACCGTGGGGCCCCAGGGTGCCTTGCTCAGCCTTCTCTCTACCACATCCCAGATAGGCAGCTATCCAACCTAAGCCTGTCTAGTTGCTGGACGGTGCTTCTTGATTGCAAGCTTTTTTTTCTGCCCCAAGACAGGGTTCCTGCTTTTGATTCTAATTACACGATGAACCTATGGAAGTCCTACTCCTGCGGGTTCAGGACTGAGCACAGAAAGGGCTACATAGAGGAGTCACACCCAATGCCCTTTCAGGTGTTCACAGCTTACAGGCAGGTCACTTGGCATGACATACTACATGATCCGAGGTGTAAAGGAGAGTAGAGTAGCAGAGGAAATAGTCCTGAACGTTAGCAGAAAAGGAGGGAAGCCACTTGGCATTTAACCTAAAGGTGTCCCTGTAAAGATAGACACAAAAACAAGGAGGAAGCTCACCCCGAGGGTTGATTGTGCCAGAAAACAATGGCACTGGAATGGTCAGGGTGGAGTGTGCTGGGCACAGTCACAGAGGTGGTGGTGGTACCCAGGACGACGTGTATACCCAGTGGGCTGAACTTTGACTTTCTGTACAGCAGCTAATAAGTACAAATCAAGGTAGTAGACATTACCACCCTCCCTGTTTACATTTAATGAGCTATCTTAGAGGCTTTGGGGGGACTTTCATGACTACCCAAATCTTTACCTGTTTTTAGATATAGTTCTATATATCTCTATATATGATATATAGAAATGCTGGTAGACATACATGTTCATTGGTTATGCAGATACATGCAGGTTATACATATATTTCCCTTTTATCAACTCGGAGAGCCAAAAAGAAATGTTGCTCTAATGTCAACTTACATCTCTACTGCTGTGGGTTTCTAAGTCCATTATCTAAACGCAATAATGAGACTCGGGAGAGTCTAGCAGTAATCTTGGAGAAATGGGACAGGAAACATATAAGAAAGCATGACAAAGACAGGTCACAGTTCTCACATGGCCCTGCCAAATGTCACCTTTTGTGCCTCAGTTTTCTGATCTACAAAATGGCGCCACTATTTACAGCCATGCTTAGATGTGGCATTTGAGCATAGTGAGGGCTGAGCAACAGAGTTAGCTCTAGGATAGTCCACTGTTATGAGCAGAACACAGCAGTACCAAGGCTTTGCTGTCAGCATGACTCTTCACTCTTGTCATGTTCCCTGGGACGGGGACAGCCTTTCCTGCCTCTGCAGCAACCTCTCTGTTCTTTTGTGTGCTTTGCTGGTACCCTATCCCTGCTTATAGTAGCCACTGCTGTACTTACTTATTTAATGTCTCCGTTCCACATAAATTTGCACTCTTGAGCGTGAGAATGCACTTGCCCAGTGTAGTGCAGCCTGTACATGGCAAATACTCAGGGAATCTATGAATGAATAGGATGCAGATGTCTTCCTGTGGGAGAGGTATGTACGGGCGGGTGTCCTAAGTGGCATTCATTTTCAAAATGGAGAACCCAAGGCCCAGGGACTATCAGCTCATTTACTGTCCCCTGCCCCTGCCTACTGTGATGGTTGAACAGAACCTATGACCTTATCCATACGTGCTAGGCAAGGGCTGACCCTTTACAAAGCCCTGGCCCTTAAAATTTTTTTTTCCACTTTAAGGCAGGGTCTTGCCTCAAAGACCAAGGTGACTTAGGCTGGCCTTGGACTCTCTCTGTTTCTCTGACAGGCCTGTGGTAGTTTTCTGAGCTGAGTTGGTTTCCCACTTGCCTTTCAGTGACATACAGAATACGGTGTATGAGCAGGTCTCAATGTTAGATCTGCAAACAGAGGCAATTAACGCTCTGGGTTGCAGTCACGTGTGGGAGCCATGGTTTCCAAAGCTAGATAGAGCTTGTGGGAGTCACTTCTGCTCTGTGCCTTTGGACAGCTTCTCACTCTCAGCAGCCTGCTCCTCAAGTTGGGATGAGTCTCTATCATGGAGGGTTTTGTTTAAGCCATCAGGACAGCAAGGACTAATGCTGCCCGTTGGCCCTTTGTTTTCTCTAG
Seq C2 exon
AACCAGGATGGGGCCTGTGTCCAGTCCGTGTCAGTGATCCTGCACCAGGACCCTCGGAGACAGGTGACCCTGACCCAGGCAGGAGATGTCCTTCTATTTGACCAGTACAAGATCACCCCACCCTACTCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-Otog:NM_013624:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(31.5=34.7),PF0009420=VWD=PU(29.5=93.9)
A:
NA
C2:
PF0009420=VWD=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: