MmuINT0114461 @ mm9
Intron Retention
Gene
ENSMUSG00000011257 | Pabpc4
Description
poly(A) binding protein, cytoplasmic 4 [Source:MGI Symbol;Acc:MGI:2385206]
Coordinates
chr4:122972993-122973300:+
Coord C1 exon
chr4:122972993-122973079
Coord A exon
chr4:122973080-122973172
Coord C2 exon
chr4:122973173-122973300
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGTA
5' ss Score
-1.91
3' ss Seq
GACCCTGTTCTCTCCACAAGGCG
3' ss Score
6.06
Exon sequences
Seq C1 exon
GGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGACTGACAGCTGCCAGTCTGGAG
Seq A exon
GTGGTATTGGATGCACACAGAAGGGGGAAAGCTGGGATTTGACGGGCCCTTGCCCAGGCTGACATGCCTTAATGACCCTGTTCTCTCCACAAG
Seq C2 exon
GCGTCCCTACAGCCGTGCCAAACCTTGCACCTCGGGCCGCAGTTGCTGCCGCCGCTCCCAGGGCTGTGGCTCCATACAAGTACGCCTCCAGTGTCCGCAGCCCACACCCTGCCATCCAGCCGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011257-Pabpc4:NM_130881:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=NA C2=0.578
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCTTGGCTATGGACTTTG
R:
GGACACTGGAGGCGTACTTGT
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: