MmuINT0116412 @ mm9
Intron Retention
Gene
ENSMUSG00000004630 | Pcp2
Description
Purkinje cell protein 2 (L7) [Source:MGI Symbol;Acc:MGI:97508]
Coordinates
chr8:3624786-3625545:-
Coord C1 exon
chr8:3625470-3625545
Coord A exon
chr8:3624901-3625469
Coord C2 exon
chr8:3624786-3624900
Length
569 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAATCACGTCTGTCCCCAAGGCA
3' ss Score
3.61
Exon sequences
Seq C1 exon
GAGAAAAGTATAGGAGAGATACACAATGGACCAGGAAGAAGAAAAGGGAGAGGGAGGCTCAGACCTTCTAGACAAG
Seq A exon
GTAAGAGGGCTCTGGCTGACTCCACCATCCGCTTCTTGAGGTCTCGGCACCTGTAATTGACAAGATTAATTCATTTATAGGGCATCTAATTAGCAAGCAAGTCTCTGGAGTCCCCTGACCCAGTTACTATAACACACAGGGGGTATAGGTAGGAGAGTATAAGAGCCCCTCCTCAGGGCAAATGAATGGATTCTTAGTACTGTCCCCCAAGAGATAGTAGGTACTAGGATTTAGGGGCACTTCTGAGCCCCATTTCCCTGGTAAGTGTCCCAACCCCCCAAATCAACCCAAGCCTGGTCTCAATCTAGGACAGTGGTAGAATGCTGTCCCTAGAGTCAGTACCATGTGAAATTGTGCTGCAGGCAGGGGCCCCAGGCTGGGAGGTGGGGGTTGGGGGAGTCAGGGGCAGGTCAGGGAAGGAGACTCAGGTTTCATTTAGAGAAATTCTGCAGACCCGTGAGGACTATGGTGAGAGCAGAGATGGGAAGGCAGGCACTGTTTCGGGTGGATGCTGTCTGGAAGACAGGGAAGGCACAGACCAAACTAAACCAATCACGTCTGTCCCCAAG
Seq C2 exon
GCAGGTTCACCGGACCAGGAAGGCTTCTTCAACCTGCTGACCCACGTGCAGGGCGATCGGATGGAGGAGCAGCGCTGTTCCTTGCAGGCTGGGCCAGGCCAGAACCCAGAAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004630-Pcp2:NM_001129803:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.995
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218812=GoLoco=WD(100=59.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGGAGAGATACACAATGGACCAGG
R:
GGCTTTCTGGGTTCTGGCC
Band lengths:
182-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: