MmuINT0116855 @ mm9
Intron Retention
Gene
ENSMUSG00000030653 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:108656191-108656643:+
Coord C1 exon
chr7:108656191-108656261
Coord A exon
chr7:108656262-108656520
Coord C2 exon
chr7:108656521-108656643
Length
259 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGT
5' ss Score
9.2
3' ss Seq
TGTTTTGGCTCCTCCACCAGATT
3' ss Score
7.28
Exon sequences
Seq C1 exon
GCCATCCTGAGCATGCTGCAAGACATGAACTTCATCAATAACTACAAAATTGACTGCCCAACTCTGGCCCG
Seq A exon
GTATGTGCCCCGCACTGCCCTTGGAGCAGAGCCCCAGTTTCCCCTTCCTGTTGTCCTTAAACCTCAAGTCCATTCCCCCAAGCATTCTTGAGGGGGGGAGACTGGATTTACAGTGATGGGGAGGGCTCTGTGAATCAGGATCCATTCTCAGACACTGGATCGTGGATAAAGAAAGGCAAGAAAATGTGACGGGCAATCTAGAGGGCTTCCTGAAGGAGGAGAGGCTGAGGCCCCTCCCCTGTTTTGGCTCCTCCACCAG
Seq C2 exon
ATTCTGCCTGATGGTGAAGAAAGGCTACCGGGATCCACCCTACCACAACTGGATGCACGCCTTCTCTGTCTCTCATTTTTGCTACCTGCTCTACAAGAATCTGGAGCTCTCCAACTACCTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030653-Pde2a:NR_026574:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0023314=PDEase_I=PU(11.3=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCCTGAGCATGCTGC
R:
TCGAGGTAGTTGGAGAGCTC
Band lengths:
194-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: