MmuINT0116861 @ mm9
Intron Retention
Gene
ENSMUSG00000030653 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:108658820-108659481:+
Coord C1 exon
chr7:108658820-108658932
Coord A exon
chr7:108658933-108659442
Coord C2 exon
chr7:108659443-108659481
Length
510 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
3' ss Seq
ACGTCACTGTTGCCTTCTAGGAG
3' ss Score
9.41
Exon sequences
Seq C1 exon
TGGGTTATGACCGAAACAACAGGCAACACCACAGGCTTCTTCTGTGCCTCCTCATGACCTCCTGTGACCTCTCTGACCAGACAAAGGGCTGGAAGACCACCAGAAAGATTGCA
Seq A exon
GTAAGAACCAGCCCTCCAACCTGAGAAAGCACAAGCTATGCTCTCAACCCAGCTCTGTGTGCCCCCACCAGCTCTGTGTGCCCCCACCAGCTCTGTGTGCCCCCACCAGCTCTGTGTGCCCCCACCAGCTCTGTGTGCCATCACCAGCTCTGTGTGCCCCCACCAGCTCTGTGTGCCACCACCAGCTCTGTGCACCCCCACAGTAGCCTGAACAGCTCTCTGTGCTGGATTTAGCCTGGTTGTATTTTGGGGAGTCAGAAACCCAGAGTGCCTCAGAGCAACAGATGAAATGGCCCAGATGTGCACTGAACTCACCCAGGGTCACGTAACAAATTAGAGGCTTCTGGGAAGTGGGCAGAATGCAGACTCTGTACTGTACCATCTCCTGTTAAGCTAGCGAGGGTAGGCCCTGGGTGGGACTGAGACATCGGGCCTCAGTTTGCCACCGTGGGAATGGATTCTGGTGGACAGATGCCACTCACAGGAGGTGACGTCACTGTTGCCTTCTAG
Seq C2 exon
GAGCTGATCTACAAAGAGTTCTTCTCCCAGGGAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030653-Pde2a:NR_026574:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(15.5=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: