MmuINT0116867 @ mm9
Intron Retention
Gene
ENSMUSG00000030653 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:108644151-108648961:+
Coord C1 exon
chr7:108644151-108644206
Coord A exon
chr7:108644207-108648901
Coord C2 exon
chr7:108648902-108648961
Length
4695 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CGCTTCTCCCTTCTCTCCAGGTG
3' ss Score
12.12
Exon sequences
Seq C1 exon
TGCTGGTCATACCCCTGCTGGACAAGGAGACTGGAAGTGTGGCAGCTGTCATCTTG
Seq A exon
GTAAGAGGCTGCCCAAGTGGCTGGGTTGTGGGTAGGATGGGAAAGAGGAAAACAGGGCAGGGGCGGGGGGGGGGGGGACGACTGTGGTTGGAGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGGAGTGTGAAGGTGCATTACCACTGGAGTAGACTGGAGGCAAATGAGGACTTGACCAGAGCCTGGGCCATCTTCGTAGTCCAATGCTGAACCTCATCCTGGTCCATTGGGTGATCCAAGTTTCATCTGAACTCAGCCCTCATCAGTTTCCTCTTGGAAAACTCTGGATGTGTTATAGGACAGGGACACATTGAGGTGATTGTGATTAACAGACACTGAAAGAGCACAGAAAGGGACATGAGGCTGTCCACACTAGAGACATTTAGGCAGTTTAGGTATCTGAGATGCTGGAGCTAGGGGCTTAAAGAAAGGTGAGTGTCCCCAGCGGAGATGCCTGGGTGACAAGCAGCAACCAAGACGCTTCTCGAAGCCGCAAGCCAGAGGGAAGAGAAGGGGCCTTCATCAGAAGTGAAGACACATGGGAACTCAAGAGGTTTGTTTCCTCGGGTTCCTGGATGCTCTCTACTGCCCCTCCCGGGGTCCCCAGGCTTTGCTCGAGAAGGTTCTATTCCTCTTCTAATCTCTTTCCCATATGGAGATGGATGTCAAAATCCTTGTCCTGTCCCAGGAAAAGGCTTGCACCCCAAGCCACAGCAACTGGTGATCTGCCAGCATCAGAGTGGTAGTTCCCCAGACAAATAAATTAGGCTCCAAGGGACTCCTCCTGATCTCATTAACAGGGAATTAGAGGTTTCGGAGGCGCCTGACCTTTCCTGAGCTGCAGGGCGGGCAGTGGGATTGGAGGGGGCAGCCACCCACTGGGGTGAGGTGCCTGCCTGGCTTGGCTCCCTGACACCAGGCCCCATCTGCCTGAGGGGGAAAGCCCAGAATCATCCTTACTGATCCCCAGTCCCAGTTATTCCCCTGGTGAGGAGATCTGCTGTGGACAGAACTCTCATACCCGACTTCTTGCCCTGTTTCTTGGGTAGCCTGTCTTGGAGCTGGCAGACTGAGGACAGGCCAGGGCAAGTGTAAAAACTGGGGTAGGGAGACAGTGGCTTCAGTCCACCTTCTCTGTAGACAGAACAGATCTAGAGGTGCCAGGCTCCTTGCAAGCCCTGTCCTCACTTTGAGACGGTGAAGATTCAGATGGGAAGGAAAGTATTTCCCCCAAGGTGAAGACATTGCGGAAGTTGTTCATCTTGGCAACAGAAGGTTGGTTGCCACACTTGCCTTGGCTAGTGTCAAGCAGGGGTCTGGGCTTCAGCTTTCTGGAGAGAGGAAACCCCAGTGTTGTCTTAACTCAGCCAGTGCTGCCTTCTGGGTGCTGGGGCCAGCCATTTTGACTTCTTGGAGCTTGTTGTCTGGGGACAGGCAGGGACACACCTTCAGGCCACCAGGAGCCAAACAAAGTAACTGCAGCCAGCAAGTGCCCTGGAGCAGCAAGGGGTGGCCCCCCAGTGGAGAGAGCCTTTGAGTGAGGCTTTGGGGTAAAGGTAGGAGGTGGGAAGGCTGAGGAAGGAAAGGGCAGTAGGAACAGCATGAGCAAAGGCAGCAGGAGAGGAGGCGAGAGCAGAGAGGGGATGGAGTGGGGAGAGGAGTGTGAACCAGCGAGGCTGAAGTGTGAGATGTGTACCACCAAGGAAGATGTTACCTGGGGCTCAGAAGTTTCTGACAGACATTTCCTCATCTGCTCAAGGATCCCGACAAGAGCGAAAAGCTCTTGAAAGGACTTTAGAGCATATCACTGTCCAATTCTCTAAGCCTGAATTTCCCCAGTCAGGTAGAAACACTTCTTAGGACGCCTGCTCCCCAAGGCACACACATCTGACAGCTGCTCCCTGGGTCACAGGATCTTTCATCTCTCCGGAGGCAGCACAGGCAGCCATGGGGTACCCAGCTGCTACCCAGTCCTGAAGGTAGAGGGGACAAAGGAAGAGGGAGGACCATAAGTCATCAGCTCCTTCCTTGATAACTCCAAACTTTTATCTGGGTCTCTGCTGTCGGTGTCTATTGTCTACACATGCATGCATGCAAGCAGGCAGGCATGCACGCACCCACGCACACATTCATCCAAGACCTACTTCCTACTATGGAGCACTGCGCTATGTTCTGGGAACACAGAAATGACCAAGCTAGGTCATCAGCTCCCGCCTTCAGACCATTTGTCTGGAGGGCATGAAACAGGTGGTACATGTAAGGGAGGATTGCAGCCGCTCACAAGCTGTAGCCAGCAGACCGGGTAGTCCTGTGAGGAGCACTGGGTTAGATGGAGCTGCAGTCAGCAAAGGACCTGCTGAGCAACGTGCCATCCAGGTGCACAGCTGAGTGCCGGAGTTCTCAACTTTCCCAGCTCAGTTCAAGGCGCCTTGATTGCACAGTCTTTGTGTGGAAAGCCTCACTCTGTTTCCCAGTTCTGGGAGAATAAGTCTCTTTGAAGAGTGGGCGGCTCTTGGTCTCTGGCATATGATGCTTTGCGCCTGCTCCCTGTCCCCTAGCCCTGCCTGTTAGCTCCTTGCATGGAGTAGGGTGTTCATGACATTAGTCATGCTGAACTTGATGGGAGTGGGCCTGGTAGTCTGGCCAAGTTTTTCATTCTTTCTAAACCCTGGTGCCCACCGATTAGCATTTCCCACCGAACCCCAGACACCCACCTTAACATTAGCATTTACAAGGGTAAATGTTACCACATGGGAGTGTGTTGGGGGGATGAACTGGTTTGTGTTATGAAATGTCGGAAGTATGGGTGTGGCTCTTGGGTGTATGAACTAATTTCCTGAGTGTGTACATGTGGATGGTGCAGGCAGTGGTGGTGTGTGTGTGTTTCCATGGGGCAGTGAATGCAAGTGTGTACATGTGAAGGGGCCTAAGGTTCTTGCAGCAAGTACCTGTGTGTGCCTGAGCATGTGCTGACTGGCTGGACTGAGGCAGCCCAGCAGTGCATGCTGGGATGAGGGAACATCACAGTTTCTTCTTTTCCCTCAGCAATTTCAGCCTCACAGTTCTGCTTCTGGGTCCAGGCCTTTGGGAAACCAAGGAGTTGGTTCCCCCACTGCTCCCAGCTCTAGAGGGGTCCCACCTGCTCCTCTCCCTGAGAGATGGGGCTCTCCTCTACATCCTAACCAGAAAAGGCCAGCACAGTTATGTAAACAGCATGCAGCTTCAACTCAGTCCTAACCCTCCCACCTCCAGTCTCCTCCAGGTCTTCCTGGCTCTAGTCTTGCTTCCTGTCATTTACCTTCCGTCCCATAGATGACAGCTATCAGATCTAAAGTTTACCACAGCATCCTAAATCCCAAGTTCTAGGCCCTTCCCTCAGTGACTCCATGGACTTTACTCCCTATCCCAGGGACCTCATCTTCCTGTAAACCTCCCACTTGGCTCCTAATCAGGACAGCCTTCTATCTACAGCGCCCCCTTCTGCTTGTACTTCCAGCGCAGGAAGCCCCCCAGATCCCATTCCCTCTAAGAGTCACAGTCTGTCTATGTACCCCGACCCCCTCAGGTATAAGGTCCCACACCCCCTTCCACGCGTACCCCGACTCATCCCGCTCCTGGCCAGCCTGTGAGCTTCCTGCTGGTCTCCTCCTCCTCATCTGTTCCTGGCAGGGGACCCAGCGCAGGGAGGCAGGCAGGGGCTGCTGGGTGAGGGAAGCAGGATGAAGCCCACACCCCCTGCGAGCACTGTGGGAGCCCCACAGGTGGCGAACAGCTTTGAGTAAGCTAAGGAAGTTGAGACAGCAGGTGGGGAGGAAGCCTTGTTGGCGGGCCACCATGGGTCCCTAGGCTGTCATCTCTGCTTTTTTCCATCCCCGTTTCTCCACATTTCCCTCTTAAACACCCAAGAGTGCTAGAGGAAGAGCATGAAAGATGGCTGAAGTGAGCCCTGGTGACTAACTAGCACAGGGACACAGGACAGGGGAGGATAACCGCGTGGTAAGAATGAATCTAGAGAGTCAACATGGAAGCGGGAAGGGGAGGGGTGGATAGAGATGTCCTAACGCTGCTACTTTCTGCTTGATGATTTTCGGAAGGTCCCCCACCTCTGGCCTCCCTGGCTCATCTGTAAGGGGAAGATTGCATCTCCCCATGGTGAGAACCATGTGTAAGGCAAAAAGCACTCCCTCCCTCAGCCCATTCATCTGTGCACAGCTTCCTGGCAGGTGTCAGTCATGCCTGGGCTCCCTTCTTTAACCCCAGATGTAAGGGCAACTCAAACCCCACTCAGAACGGATGGAGCTGGAGGCTAAAGCCAATTCCACAAATCCTCTAATCAGGGCCTGAAGCGCTCCGTGTGTGGACGATGGAGAAGGGTCTGAGGTCCGCCTTCCTGACTCTGTATACCTGGACTGGGCTGTCTGTGGCACAGTTTGCTCCAGGAACGGAACAGTAAGCGTGGAAAGTGATGGGACAGACAGGAAAGTTCCACTCTTATCACCTGCCCTGGACGTCTTCCTTGGGAAAGTCACCTTCAGAGCTAGCTGCCTGGCTTACATGGAGGTCATAGACTGTATTGGTGGCAACTGGTGTTGAGCTGGCCACGGGAGGACATGCAAGTGAAGACAGACTGGGGAAGGTCACATCTGGTCGCTTCTCCCTTCTCTCCAG
Seq C2 exon
GTGCACTGTGGCCAGCTGAGTGACAGTGAGGAACAGAGCTTGCAGGTGGTAGAGAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030653-Pde2a:NR_026574:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: