MmuINT0117739 @ mm9
Intron Retention
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87564146-87566203:-
Coord C1 exon
chr3:87566134-87566203
Coord A exon
chr3:87564308-87566133
Coord C2 exon
chr3:87564146-87564307
Length
1826 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCTGCTTGAATCTTTGCAGATG
3' ss Score
9.11
Exon sequences
Seq C1 exon
AATCTAGATCTTGAGCACTGGGATCCACAGAACATCACCTGGCTGCCTAGGCCCATGCTGGCCATCACTG
Seq A exon
GTGAGTCACTTGGTTGAGTGAGAGAAGCCTAGAGTCAGCAGGGGGGTGGGGAGGTCCTGGGGGGTGCAGTGGCTCTGGTCGGTGAGTGAGTTGGGGAGAGGTCCACTCTGGGAGGCAGTGACATAGAATAAGGAGGACCAAGGGAAAAGTGTTGGGGTGAAAGGTGGGGCTGGACCACAGCAGGGAGTTGGGGTTCAGTTAGGGAGTCTGTGTTAATCTGAGAAGGAGGCACGCTATCTGAGCTGAGAGAGTCACAATCTGCCAGAATAAGTGGGTGGGTGGGGGGCCGGGGTGGGGCTGCAGCAAGCATTCCAGAGATACTCAGGGGTGTAAGGGGCCAGCAACTGCGACCTCTCGGAGAAATTATAAGCAGATGTGGGCATCTCTGGAGAGCCGAGCCCGGAGCCCGGGCAAGTTTAAGAAACTCCAAGCAGAAAACAGGAACCCAGCGGCAGAGGGGTGGCCTCTAGCCCTCAACCTTTCCTGAGCCTTGGCGTTCAGAGGAAAACTCATCCCATCCAGGGCCCTGACTCACTCTCTCCCCACCCTCTGGGTGAGGCCGAGGTGTGGAGCTGGTGAGGGGCCAGTTTCCTAGCACTGTGAGAAAAACGTGGACATTGCCCCCTTGGCGCGCACCAGTGGCTGTGTGGTCACCTAGCTGTGGCCTCACGCATGCAGTCCCCCACGGCAGTAACCTCCTGTGCTTCAGCAGTAGCTTTGGCTCTTGTCTGCCTACATACAGCAATGGAAGCTTGCTCTCAGTGGCATCTGATACTGAACTGTCCATCGGAAAGTTCTGGACCGAGCCCACGCTGGCTTCCCTGAGAACCTCCTTCATTGGTCCCAGCTTTTGCACTGTGGTGTCCTGCTGTTTGTTAGGCTAGGGGGTGTTCAGGGGACAAGAGAAGTGGATATGTAGTGTTAGGAGACTTGTAAGAGAGATGAATGTGGTGCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTGGGAGATGGAGTTGTCAGGGAGCAGACAGAAAAGGAAGGTGGCACTCAAGCCAGGCCTGAGGCACAGAACTCTAGGAATAATGAGAGCTGGGGTCAGTGTGTTAGCAAACTGAGCTGAGACCTGGAGCCATGGAAGAACGCTAGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTGTTCTGGGGGAGCTGGAACACTGTTCTGGGGGAGCTGGAGCATTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTGTTCTGGGGGAGCTGGAACACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGTAGCACTGTTCTGGGGGAGCTGGAACACTGTTCTGGGGGAGCTGGAGCATTGTTCTGGGAGAGCTGGAGCACTGTTCTGAGAGAGCTGGAGTACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTACTCTGGGGAAGCTGGAGCACTGCTCTGGGGAAGTTGGAGCATTGTTCTGGGGGAGCTGGAGCACTGCTCTGGGTAAACTGGAACACTGTTCTGGGTTCTGGGGAAGCTAGAGCCCTGGACCAAAGGACTAGGGAGGCAGTGGGCTGATTTCTTCAGCATGCTTCCTGCTTGAATCTTTGCAG
Seq C2 exon
ATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTTTGTTACCGTGTGCCCTATCGCAGGCCTCTGCAATGCCACTTTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGACTGGGACACTCAACTCCAATGATCCCAATGTCTGTACCTTTTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-Pear1:NM_152799:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(12.2=28.1)
Main Skipping Isoform:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTAGATCTTGAGCACTGGGA
R:
TTCCCAAAAGGTACAGACATTGGG
Band lengths:
230-2056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: