MmuINT0121224 @ mm9
Intron Retention
Gene
ENSMUSG00000021822 | Plau
Description
plasminogen activator, urokinase [Source:MGI Symbol;Acc:MGI:97611]
Coordinates
chr14:21658554-21659145:+
Coord C1 exon
chr14:21658554-21658776
Coord A exon
chr14:21658777-21658996
Coord C2 exon
chr14:21658997-21659145
Length
220 bp
Sequences
Splice sites
5' ss Seq
CATGTACGT
5' ss Score
6.32
3' ss Seq
ACATGTTTCATTTCTCACAGTCA
3' ss Score
7.84
Exon sequences
Seq C1 exon
GCAAAAAGCCTTCTTCGTCTGTAGACCAACAAGGCTTCCAGTGTGGCCAGAAGGCTCTAAGGCCCCGCTTTAAGATTGTTGGGGGAGAATTCACTGAGGTGGAGAACCAGCCCTGGTTCGCAGCCATCTACCAGAAGAACAAGGGAGGAAGTCCTCCCTCCTTTAAATGTGGTGGGAGTCTCATCAGTCCTTGCTGGGTGGCCAGTGCCGCACACTGCTTCAT
Seq A exon
GTACGTCCATCCCTTTGTCCCTTCTCTCTGACTCTTCCACCCAACCCCAAGACTGTCCTTCCTCCTTCCCTATGGACGGTTACAATGTCATTCTCCTGCTAACCCTCTAACCATGCAGCTTGTGGTCTTGGGTACAAGTAATACTTTGAGGCCTCTGGGGTGGAGTGGAGAGAGTGACCGGACTTTGTGAGACCAGGCTGACATGTTTCATTTCTCACAG
Seq C2 exon
TCAACTCCCAAAGAAGGAAAACTACGTTGTCTACCTGGGTCAGTCGAAGGAGAGCTCCTATAATCCTGGAGAGATGAAGTTTGAGGTGGAGCAGCTCATCTTGCACGAATACTACAGGGAAGACAGCCTGGCCTACCATAATGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021822-Plau:NM_008873:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.2=65.3)
A:
NA
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACAAGGCTTCCAGTGTG
R:
AGATGAGCTGCTCCACCTCAA
Band lengths:
300-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: