MmuINT0122230 @ mm10
Intron Retention
Gene
ENSMUSG00000059481 | Plg
Description
plasminogen [Source:MGI Symbol;Acc:MGI:97620]
Coordinates
chr17:12390217-12391869:+
Coord C1 exon
chr17:12390217-12390356
Coord A exon
chr17:12390357-12391748
Coord C2 exon
chr17:12391749-12391869
Length
1392 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCTCTTCCCACACTGCACAGAGG
3' ss Score
6.3
Exon sequences
Seq C1 exon
CTACTCTCCCAGTACACATCCCAATGAGGGACTAGAAGAGAACTACTGTAGGAACCCAGACAATGATGAACAAGGGCCTTGGTGCTACACTACAGATCCGGACAAGAGATATGACTACTGCAACATTCCTGAATGTGAAG
Seq A exon
GTAGGGGTGGATCTAGAAAACCCCCTTCTGTCTGCTTGTCACCTGGCATATGCTATACAGCCATTTCTCAGAAACATCATTAAAAAAAAAAGATTTGTGTTGTACACTACAAAATGAAGTAATGAGCTTGCTCTTATGAAGGAGTCCCAGTTCTGACCTGAACTATCTTTATTAAAATGTTATTTCAACATATGCACATGGATAGACAGATCTAAAACTTGCATACAATTTCTTTGGTTAAAATTCTACACGGTGCAAAACTCCAAAGATGGTTGCTAGTAAATAGCTAAATTAAAACCATGAAGCCACTGGAATTCAAGCACACAGGAGGAATGATCTCATGTGAGCTATTCTGTTGAGATGGAAGTTAAACAGCACACCAGTTTGTGTGTGTCGGCATGCCTTCTTCTAACGGGCCCATCGGCTTCTCAAAGAGCCTCAAAGGTTAATGCTAAAAAAGCATTAAAACATCAGATGGGAGAGCATCTACGTTTCCTATTTCTAGGTGTGTTTATTAGAGTAAGAAAAAAGAGCCAGGTGGTGCTTATGCAGCAGCACGGGCATGTTTCAGGGGCCAACTCCTTTCTTACCACTTTGTCTATGTGGACAGAGGAGCGCCTGCATTTGGAAATGGATGGTCACAGGCTATTTGGCTTTTACATCCCATGAACACAGGCTTTTTATATCAAATTCACAGATTTTTTTTTAATGCTACCATAAAAATTCCAGTTGTGTGTTATTTCTCATCAACATGGGACTTTAATGATTCCAAATCCAAGTCTTATTTTTAAAATAAATTAGACTGCAAAAAAGAAAAACCAAATACCACACCCCTCCACCCCTCACATATACATGCCCCAATCAGTCATGTTTCTCAGCAATATGCAAACAGAAGCTTGACTGCTTAAGGTTGAGTGGGTTTCTCCAATGGCACTAGTCTCACTGGGGACAAACAAACAAACAAACAAAAAAAACCCAGCAGAAAGTCCCAATGGTTCCCATATGTCTGTCACTCATCAAGTGATCAGAATAAGTTCATTGAATTTTAAAAAACCACATGCCAAATTTAAAATGGAGAATGTATAGGCTTCTGAGAGCATGTGCCTTCCCCATGGGAGCCTCCCAGTTTGAGGTCATGTATCAGAGTTTCTGACTGCCATAGTTAAGGTGACACAGACTCATAAAGCCCAAATACATTGTCTCAGAAAAAGATGGGGACCCTGACCGCATCAGAACATTATAAGTCTTTACTGCCAAGTGGTTACTGGGAGTCAGGTATGAATGGGTGGCAGGAAGCACTGGAGACCTCTCTAGAGGGACTCCGGTTTATGTTCCACTGTGTTTCAATGTCGGTTTCCCTTTCTCTCTCCCTTCTCTTCCCACACTGCACAG
Seq C2 exon
AGGAATGCATGTACTGCAGTGGAGAAAAGTATGAGGGCAAAATCTCCAAGACCATGTCTGGACTTGACTGCCAGGCCTGGGATTCTCAGAGCCCACATGCTCATGGATACATCCCTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059481:ENSMUST00000014578:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=93.8)
A:
NA
C2:
PF0005113=Kringle=PU(48.7=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCTCCCAGTACACATCCCA
R:
GGATGTATCCATGAGCATGTGGG
Band lengths:
254-1646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types