MmuINT0125644 @ mm9
Intron Retention
Gene
ENSMUSG00000015474 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:MGI Symbol;Acc:MGI:1860075]
Coordinates
chr17:34762582-34762876:-
Coord C1 exon
chr17:34762781-34762876
Coord A exon
chr17:34762690-34762780
Coord C2 exon
chr17:34762582-34762689
Length
91 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCATGGCGGTTCTCTTTCAGACA
3' ss Score
6.74
Exon sequences
Seq C1 exon
GGGGCCTGGTGTGCCGTGCTTTGCTGTCTGTCATGGATAACCACAATGTGGACTCTTTCATCTCCCTCTCCTCCCCACAGATGGGCCAGTATGGAG
Seq A exon
GTGAGTGGGCACTGTGGGTGCCATAGAAGGCAGTATAGTGTGTTCGGGGCACAGAGATTTGATGGCCCTTGGCATGGCGGTTCTCTTTCAG
Seq C2 exon
ACACGGACTATTTGAAATGGCTCTTCCCCACGTCCATGCGGTCTAACCTCTATCGGGTCTGCTATAGTCCTTGGGGCCAGGAATTTTCCATTTGCAACTACTGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015474-Ppt2:NM_019441:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(12.1=100)
A:
NA
C2:
PF0208910=Palm_thioest=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGCTTTGCTGTCTGTCAT
R:
AATTCCTGGCCCCAAGGACTA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: