MmuINT0127516 @ mm9
Intron Retention
Gene
ENSMUSG00000032493 | Prss44
Description
protease, serine, 44 [Source:MGI Symbol;Acc:MGI:1920586]
Coordinates
chr9:110717797-110719075:+
Coord C1 exon
chr9:110717797-110718056
Coord A exon
chr9:110718057-110718920
Coord C2 exon
chr9:110718921-110719075
Length
864 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAAAAATTTTCTCTGTGTAGGTA
3' ss Score
8.3
Exon sequences
Seq C1 exon
ACATCTGGATTATGCAGTGTTCATGGGAGATGCTGACTTGTGGTCCAAAAGGCCAGTCAGGATTCCAGTCCAGGACATCATCGTTCACCAGGATTTCTCCATGATGAGAACAGTTGTTCATGACATCGCCCTTGTTCTGCTGGCCTTCCCTGTGAATTACAGCGTCAACATCCAGCCCGTGTGCATCCCTGAAAAGTCTTTCTTGGTACAACCTGGGACGCTATGCTGGGTGACCGGATGGGGCAAAGTACTTGAACAAG
Seq A exon
GTGAGCCTAAAGTGAGATTCCAGCAAGTATGGACCAAGGGTCAGACTGCTTAGTAGTCTGGGATTGGTCTACAGGCTAAAGGGAGGGGTGGGGATGAAGGAGGGGGGAGAGGGAAGATATTAAGAGAGAGCAACTGTTGGTGAATTTCTATGGGTTTGAGGACTTAAGTACCAAACAGGGTGGATGCTCACCAGGGTGGATTTTAGCTCAGGGTGTGATGACCTGTCTGGAAGCTAGAAGTACCTACCTTGGCAGGGAGGGGGTTGCTTGTATGAAAGTAGAAGCCAGGGAAGTCAGTGAGTCTATGAGGCAGAGAGTTTCTCAGCCTTTGGGTCTTGACCCCTCTGGAGATCAGATGACCCTTTCACGGGGATCACTTAAGATTATTCCAAACGGTGAAATCACAGTTATGAAGTAGCAATGAAAATAGCCTTATGGTTGGGGTCACCACAATGTGAGGGACTGTATTAAGGGCCATGGCATTAGGAGGGCTGGGAAGTGCTGCTCTATTACTGGGAAGAGTTTAGATTGGTACTTTGGGGTACCACCTGTCCAAGAGGTGCAAGGAAGGATGCCTGACTGATTATCAGTAGCACTGGTGAGAGCGAACCACATACCTGTCATCTCGAAGGCTCCCTCTCTCAGGCTGTTCTTTCTTCTGCTTCTTTGGTTTGGACTTCACAATGTCATATACTCATGGCGGGGTTGGGCCTCGGTTTCTCTCAGAGTCAGATGTGAGTGGTAGCTGATGCTGTTAAGGATTCCTGTGTGTGAGCACTGTATTGAGAGCCAGAGGACGTACAACTGACTCATGCCAGCCTGCTCAATGTAGATCTGCTCTCTCCAAAAATTTTCTCTGTGTAG
Seq C2 exon
GTAGGTCGTCGAGAATACTGCAGGAGATTGAGCTGAATATTATCCGTCATGAGAAATGTAACCAGATTCTCAAGGACATCATGGGGAATATATTTACCCTGGTCCAGGAAGGGGGAGTCTGTGGCTATAATGAGAAAGGAGGAGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032493-Prss44:NM_148940:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(44.6=98.8)
A:
NA
C2:
PF0008921=Trypsin=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGTCCAAAAGGCCAGTC
R:
ATAGCCACAGACTCCCCCTTC
Band lengths:
351-1215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: