MmuINT0127518 @ mm10
Intron Retention
Gene
ENSMUSG00000047257 | Prss45
Description
protease, serine 45 [Source:MGI Symbol;Acc:MGI:3605764]
Coordinates
chr9:110834588-110838568:+
Coord C1 exon
chr9:110834588-110834739
Coord A exon
chr9:110834740-110838420
Coord C2 exon
chr9:110838421-110838568
Length
3681 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGG
5' ss Score
4.07
3' ss Seq
TTGCATTGCCTGTTTTGCAGTTT
3' ss Score
6.75
Exon sequences
Seq C1 exon
AGCACGCCGCAGCTATCTCTGCTGCCCTTAGGGACAATATTCATGTATGGCTACGTCATTGCGCGGCCTGGACGCTGGGCCTGGATCCTTGAGGCGCTGGATCCTAATCTGCTTTGCGGCGCTACTGTTGCTGCCTCCGCGGCCAAACTTAG
Seq A exon
GTCAGGCAGGCACCTCCTTCTCCATTGTCCTTTCTTTCTGTGTCCTCTCCCCTCCAGTCTTGCTCAGGTTGGCTATTCCTTTCCTTTCCGCCACCTGAAACTTCTGTGTGCCATCCCCACCTCGCTGTCGCCTCTCTTCTGCCACTCCTAGGTTCCTCAGGCCACTGCTGTGTCGTGCTGTAGCCTCCTGGAGACAACAGGCTCGGAGATGCTCGGAGCATCCCTGGCCTCCCTTCACGCACAGGCGCCTCCCGCTTTCCGTGTGTCCATCCTCTCAAAAGGATGATGTTCTAAACGTTGGGTTTTTTTTTCCCCCATCGCTAGCAGAGTCCAAGCCCTTGAGTGCTGTCTTCGCAGACTCCTCTGCCCCACAGCCCCCAGACATCCCTCCAAATCTGACTGCCAAAGGGAGAGTGTTTCCTGAGTGGGGTGGGGCTGGAGCAGGGTCCGACCCATACTGAGAGGCGGGGCTTACATCGGTCCTGCTCCACCACCATCCCAATATGTGCCCTCCCTCTCAGGGCCAGCCTTCCCCAAGAGTCATTAGCACTTTATTTATTTCCCATGTAATCCTCAGCCCATTCCTGCTGTGTTCTTCCCATTACTGTTCCTGGTTTTGTTTGTTTGTTTTACATCTCTATCCTTTTTTTTTTTTTTTTTTTTTTTTTAATTTCCTGTGGCTTCTCCCTCAGCCTCTCCCCCATTTTTCTTCTTTCATTCGTGGGGGTTGGGGTTAAGGTCTCATGAGCCCTAGGGTAGCCTTGATGTCCTGAAACTCCTGTCTCCACCTCCTTAGTGCTGGGATCACACACACACACACACACACACACACACACACACACACCTCCTCAGTACCCATATCAGGCCACCCAGCCTCATCTCTGATGTAAGGCTGTTTCTGAAAGGTGCTATTTGGTCCCTTGCCTCTTCCCTCTTTGTTCCCTGGATGACCAGTGACCTCGGGGAAACCGAGCCGATCATCTCCACACATTATCTTTCTCCTCCACCACAGATGTCGGGTGTCTCGTCCAGAGTCTCTGGAATATACTATTGTGTTTCTTCCTGGAGAGATTTTTTTAAATCAATATTTATTTTGTTTTTCTCCTCTTTGAGACATTTCCCGGTATTCTCTCCTCTCAGCCGTCTCTTCCACCGGCCACATCTTCTGGATTCACCTGATGCCTCTGGCCCAGGCCCTGCCCCATCTCACATGGTGGACTGGGCAACATGAGTCTCCAGATAGGCGCTTGTACACTTGTCTGTGCACCTCTTTACTGCTACCCTGTAAACGTCCCTGCCTCACGTCTGTCTTCCTTTTCTCCTCAGGTTATAATGAGAACTACACCGAACCAGGTGGGTCAGTGGGGCCTCATAGCAGGGAAAGTTTCAGATCTTGGGAAAAAATATGTTCTCAAAGTCTCTGCCTAAATAGCATTTCTGGTTTGGTAGGAACAGCATATGTAGCTGCCAGGACACAACCCTACTGTTTGGAACAAAGAGTGCCTGGGTCCTCCAAGGGAATGCAGAGCCACTTTGAATTCAGCTCAGGCTTTGAGCCTTTCCCACAGTTGCATAACAAGCCTCCTGGGTCATTGTCTCAAGAGCCCAGATCCCGGGACTTCCTGTCTTTTTCCTTAGACCCAGAGAGTGCATGGTTGGGGTCATAGGACTTGCCTTGGGGTGTCAGGACTCCACTAAGGTCCATGACTGACTGCAGGGTTACTATGTTCTTGCTTCTGTCCAAGCCTCGCTCCTTTCAATTTTCCCTCTGTAATTTAATCTCATTTAAAAGAGTAGTGTGAGCGTACGTGTGACTGTGTGTGTGCGCACAGTCAAATGCATGTGGAGACCAAAAGTCAAACTCAGGTGTTGTCCCTCATGGGCAGCCCACTCTGTGTCTGGAGACAGAGTCTGTCCCTGGTTGGGAGGTTACTAATTAGGACAGACTGTCTGGCTAGTGAGCTCCAGCAAACTGCCTGTCCCTTCCCCCGGCACTGGGATTACAAGTGTGTACTATCACGCCCGGCTTCACCCTGCCCTGGGGGTTGAACTCATGTCTTCATGCCTGCACACCAAGCTCTTTACCAACTGAGCCATCTCTTTAGCCCCTAAGAATGTTTTGGTTTTTTAAAACTTGGACATAAAATAGTTTTTGTTATTTTTTTTCTGTGCAAGACTGTTTGTGTGTGTGTATGCCTTGTGCCAGAAGAGGGTGCCGAATCCCCTAGACCTAGAGTTACAGATGATTGTCTATCAGTCAATGTATTAGTGCTGAGAACCGAACCTGGGTCTCTGGGAGAGCCGCAAGTGCCCTTAACGGCCGAGCAGTCTCTCCAGCTCCTCACTGGCCTTTGAAGTTAATACACCATCAGTTTTGTTAGGACGCTCTCAAACATGTTTGTAATTTTGCTTTGTTATATTATTGCCCATAACCCACCCTTTCTTTTCATAAATATGTGCCGCAGTCCTTGCCTGCAGAGACAAGAACGACACGGACACCAAGATGGGTTCACACAGCTTCCGCAACGTCCTCTTTACTTGCAGCTTTTTTTCTCCGCAGCTTTTTACTTACAGCTCTTTTTACTTAGGGCAAGGGCTATATTTATACCGTAGCGGCAACTGACCTCATCTCGCTCCACACCACCTCATCCAATCAGAATCACACACACTCCAGGCACAACCTCAGGTCGGTCACAGATAGGCTGACAGATCCGGATCACGAGGAATAATCTAACTTGGCAGGCAGCTTACGCATGCAGTTTCACTGCGCATGTTCGGGCAAGGCAGTAAACATGTGGGTTTCACAGGGCCTGGCAAGGGGTCAGGGCACCATCTTGGCCCATGCAGCACACCTGCTTCCCGCAAATATGTTTTGAGGTTTTCTGTCTCCTCTCTTTAAATTTTTTGTTTTTATTTTTATTATTTTATCTGTTTATTGGAGACAGGATCTCTCTACATCGCCCTGGCTATTTGGAACTCCTTGTGTAGATCAGGCTGGCCTTAAACTCACAGTGATCCGCTTGCCTCTGCCTCCTGAACGCTGGGATTAAAGGTGTTTGCCACACACACCCTCAGCACATTGTACTTTATTTAGAATCTCTGCACTGATGTTCATTCATTCATTCATTCGTTCATAAATCTTGGCAAATGGTAGACCACTAATAACTGTGAGCTCCAGACTGCTTAGGGTAAAGACCTCCCATAGAGAGGAGGGGAGGTCTTTTTTTTGGTTGGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGGGGGGCATCAAAGAAATGCAGCGGACAGTACAGCTTTGAAGAACAGGATCCTGTGTGCAAGGAAGGCATTTCTCATCTTGAAATCCCTGTTTTGTTTCCGCATTGTCTTGAGGTTGGGCACAGGTCTCCCTCTGTGGATCTCAGTCTCCGGCTGAAAGGTCTCTCTGTGTCTTTCTTTATCTCTGTAACTGTCATTGCTTATTCGGTTCAGTACCCTTGAGGTCCACTGTCCTCTCCATGACAGTCTCTTCTCTTTGAAATGGGAAGGAGCCTAAGCTGAATTCAAAGTGGCTCTGCATTCCTGTGGAAGACCACTCTTTGTTCCAACTCGACCCCAAGGGTGACATGGTCATTCTGATTTTCCTCTCTGTGGACTCTGTACTACCTTGCATTGCCTGTTTTGCAG
Seq C2 exon
TTTGTGGCACACCCTGGTGGCCAGACAACTTGGAGGAGAGCCACCACTGGCCCTGGGAAGCGAGCCTTCAGATAGAAGATAAGCACGTGTGTGGAGGAGCCCTCATTGATCGAAGCTGGGTGGTGTCTGCGGCTCACTGCATCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047257:ENSMUST00000146794:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(17.5=82.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types