MmuINT0130063 @ mm10
Intron Retention
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42747497-42749403:-
Coord C1 exon
chr19:42749384-42749403
Coord A exon
chr19:42747591-42749383
Coord C2 exon
chr19:42747497-42747590
Length
1793 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
AGGACCCTGTGTCCTCCCAGGCA
3' ss Score
7.36
Exon sequences
Seq C1 exon
GACACAATGGGCTGGTGGCT
Seq A exon
GTGAGTACCTCTTTGGTCTTACTTCAGTGTCCCCAGCAGCAAAGGGGGGGGGGGGCAGGGATTTGAAAAGGCGAGCAGGACAGAGGCCACAGGAACAAAGGGAAGGGCAGTCTGTCCATGCATCTAGTGTTGATCCAGGGCCAGCTAGTGGGGATGTCATAGACTGCTTCCTTGTCCTTGCCCCAAGCCATGTGGGAGGGTCCGAGGCTTATAAAATGCCTCTCACTGGTGTAGAGGAACAAGTTGGAACGTGGAGTGGGAAGAGTACCTCACCCCAAGGCAGTTTGTGCTCCCCAAGGAAGAACGCGTTGGAAAGGACCTAGTATAGAGTCTAATAAAGAAGGCTTTGCTCGAGATTAGATATTGTCAGCAAATGAAGACGACCTGGGACTCTCAAAGCTTGTCTGGAGTAGACGGGGAGTGCTCAGTATTCTGGAGACGGTCAGAGACGCCCTTTGTGCTCAGACACTGCTGTGCAGTGGGCCCGCTCAGTGATTGCCTCATTCCTGTGGTCTCAGAGCAACCTGCTTCACAGATGTGGGTCTATGAAGTAGTTTCTGTCTCTTAAGAGAGCAGCATGGCTTCGCTCTGTGTGCCAGGCCAGCTAACCAGGCTCACTCTTTTCTGTTCTCGGTACAATATACCTGGAGACTAGATTCCCAACTGGCCTCCTCAGAGCTCCGGGAGCCTGAGGCAAGCTGTTAGCCTCACTGAACCTCAGTTTCCCATCTGTAAAGTAGGGGGTAACACAACAACTGTTCCTAGCATGGTGGGCTAGCTACACCCATACAGTAGTTACCAAGTGGACTTTGCAAAAGGTGACTTAGGAAGTTCACTGTCTTTACTGTCACATGGATATCAGGGGTACAAAGACACACGTGTGTGCGTGTCTGCACACATGTGCATGCACACACACACACACACACACACACACACACACTCACACTTTCTCTCTCTGCAGGTCTGTAGGCCTAGACTAGCTTAATTTAATTTCCCACTAAGTACCAGAGAAACTGTGCATCAGTCATTTCCCTCAAATAAAGTTTTACTAAAGCCACGGCGTCCCTTTATTGCATAGGCCACAGGTGTCAAGGCACAGTCAGTAAAGCATATTTTTAAGGACTCACTAGAGAGCCGCTAAGGCAGCAGTTCTCAGCTTGTGGGTGATGACCCTTTAGGGGGTCGCATCTCTGATAGCGTGTGTATCAGATATTTACATTACGATTCATAACAGTAGCAGAATTGCAATTATGGAGTAGCAATGAAATAATTATATGGTTGAGGGTCACCACAACACATGGAACTCTATTTAAGGGCAGCAGTGTTAGGAAGGTTGAGAGCCACTGAGCTAAGGTAACCCTCACCAGCCCTGTGGAGCTGCAGAAGTCAGAACTGTAATCACTAGCTCTGCCTTTGCATGTGAGGGAACTGGGCCATGTGGATTATCAGGAACGAGATGCGGATGAGAACCCGAACCTGGAGATCCAGGCCTGTGTCCTCAACCCCACCATACTGCCTTTGATGTGCCCCAGTGGAAGAACAGGGCTTGCTCCAGCCTGGGAGGAAGGAGATGGACACCCAGGGCAGAGTAGACACGATGCAATATGTGTCCTCCAGGCCTGCCCTCTGGGAGGAAAATCATCTTCAGCTAGGAAGTTGAGGGGCAGATGTAGGCACACCAGGTCTGAGAGGACAGACATATAGACATCATACCCAAGGGTTTGGGGCAGGCCCGGCAGTGAGGCTCCTTGGTCAACCCCAAGAGATCAAGAAAGGACCCTGTGTCCTCCCAG
Seq C2 exon
GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224:ENSMUST00000076505:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(10.3=100)
A:
NA
C2:
PF134501=NAD_binding_8=FE(53.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types