MmuINT0130077 @ mm9
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128460363-128462401:-
Coord C1 exon
chr6:128462174-128462401
Coord A exon
chr6:128460427-128462173
Coord C2 exon
chr6:128460363-128460426
Length
1747 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GTATTTCCTTCTGTCTTCAGATC
3' ss Score
11.39
Exon sequences
Seq C1 exon
GTCACCTACAAGCAGAACCATGTCTGCTATGATAACTGGTGGCTTGATGAATTTCACACACAGGCAGACCATTCTGCAACTCTAGTCTTTTCTCCAAGCCAGAGTTATATTCAACTTGAACTTGTTTTTGGTACTTTGGCCTGTGGGCAAACTCAGGAGATTCGGATACACTACCTCTTGAATGAAGATATCATGAAGAATGAAAAAGACTTAACCTTTTACTATCTG
Seq A exon
GTAAGAATGAAAGTCACTGCATCTCTTTTTAATTGTATAGACTCCAAATTTCCTAGGTTCCTCTCAAAATAATGAGTTTTATAGAACATTAGTGTTAATATTTAGGTTTTTATTTTATATACTGGAAGACAAACTGCTTCCTATGAAATTATTCATGCTTTAATTCAGTTTGTCTTGTTCACTACTGAAATATTGGCTCTAAATAACATTTCTTTATTTCTATATTTTAAAAAAAGTACCACATTTACAATAGTTATAGTTTCCATTTCATCTCTTCATAGTCTTAAGACCTTGGATAATTTACTAGGCTTCTACCTCAAAAACAAGTATCAGTTATCTTACCTAAGTACTTGAGACAATAATCAATGCAATTATTAAACAAAGTGAATTGTTCAAATTACCTCATCTCAGAGTTGGCCACACAGAGAATGAGAAATACATTTTGTTTATTTTTAAATAAAAGTAACCAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGATGTTCTTCCAGAGGTCCTGAGTTCAATTCCCTGCAACTACATGGTGGCTCACAACCATCTGTAATGCAATCTAATGCCCTCTTCTGGTGTGCATTCATACATAAATAAATAAAATTTTTTTAAAAAATTAAGTAACAATAGAAGATACTTGTATTATACATTTGTCTCCACAGTATATTTCACATACAGGTGCTAAAAATATGTGTGTATGTACTTTTCATACACTACTAGGAATACAAATACTAAAGAAAATAAAACATAAAATTATATACTTGCTATTTTTCATTGGATATTTTATTTATTTACAATTCAAATGTTATCTTGTTTCCCTGTTTCCACTTCGGAAACTCCCTATCCCATCCTCCCTCTCCCTGCTTCTATGAGGGTGCTCCACCTCTCACCCACCCACCCACCCACTCCTGCCTCCCCACCCTGGCATTTTCCTACACTGGGCACTGAGCCTTCCCAGGACCAAGGGCCTCTCCTCCCATTGATGTCCAACAAGGCCATTCTCTACTGTATATGCGGCTGAAGCCATGGGTCCTTCCATGGTGGTTTAGTACCTGGGAGCTGTGGTGGGAAGGGTCTGGTTGCTCGATATTGTTGTTCTTCCTATGGGTTGCAAACCCGTTCAGCTCCTTCAGTCTTTTCTCTAACTGCTCCATTGGAAACCCTGTGCTCAGTCCAATGGATGACTGCAAGCATCCATGTCTGCATTTGTCAGGCTCTGGCAGAGTCTCTCAGGATACTGCTATATCAGGCTCCAATCAGCATGCACTTCTTGGCATCCACAATAGTGTCTGGGTTTGGTGTCTGTATATGGGATGGATCCCCAGGTGGGGCAGTCTCTGGATGGCCTTTTCTTCAGTCTCTGTTCCACACTTTATCTCCCTATTTACTCCTGTGAGTATTTTGTTCCCCCTTCTAAGAAGGACAGGAGCACCCACACTTTAGTCTTCCTTCTTGTGGGCTGGGAATTGTATCTTGGGTATTCCGAGCTTTTGGGCTAATATCCACTTATCAGTGAGTGAGTACCATGTTGTGTTCATTATGTACTTGTTATTTGAAACACACACACATATGAAAATGATGGAAAGGAAATATGGTAATAAAAATTACTTCTGAGTTGGAGCAGCATGAGAGCTATTTATATATCATGAGTATGCTAACAGACATACCTTAACCTGTCTGGGCAGACAGACCTCACAATGCTAATGGGTGTATTTCCTTCTGTCTTCAG
Seq C2 exon
ATCAAAGCAAGGGGAAGCATCTTCAACTTAGGAAGCCATGTGTTGTCGCTTGAACAAGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-Pzp:NM_007376:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(26.2=51.3)
A:
NA
C2:
PF077039=A2M_N_2=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCTACAAGCAGAACCATGT
R:
TCCTTGTTCAAGCGACAACACA
Band lengths:
288-2035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: