Special

MmuINT0130078 @ mm9

Intron Retention

Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128456754-128460426:-
Coord C1 exon
chr6:128460363-128460426
Coord A exon
chr6:128456897-128460362
Coord C2 exon
chr6:128456754-128456896
Length
3466 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
GAATCTTCTTTATTTTCCAGTGA
3' ss Score
7.73
Exon sequences
Seq C1 exon
ATCAAAGCAAGGGGAAGCATCTTCAACTTAGGAAGCCATGTGTTGTCGCTTGAACAAGGAAACA
Seq A exon
GTAAGCATCTCTTGCTTTTCATTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTAATGTATTCTCATCTTGTCAAACCTCAACATCTGAGCAAAGTGGGAGTGCATGGCAGCCCTCTGTTGTCCAGTGAGGAAGCTGTCAGAACATTTCTGGATTTTAGGGTTTTATTTCTGAAGTAAAGTATACTAATTTCATAATTATTTTCAAAAAGAAAAAATCAAAAATGTAAAAAAAAATGATGGAAGCCATTTTTCTTCATGAATTTGTGTGTTGGATCCCTATTGCTGCCCTGATGGGTTAGTACACATTTCCGGGCACATAACAACACAGGTTTCTTGGCAGGACTACCTTAGATCTTGAACTCCAGAGAAGACCCAATGTTCTTGCTTTGCCTAAACACCTCTGCCACTCCCTTCCTTTAACCTTCAAAGCTAGCACGCAGCACTCCATCTTCAAACCTCACCTGCCTGTCTCCCTTTTATAACCATCCTTAGAATGACATTGACACCACCTGGGTAGCTCAAAACAATTTTCACATCTCATGGTCCTGGTTTAACATCTGCAAAGGCTTTATTGCCATATAAAATAACACACTTAATGATTTCCAGGTCTAGGTATCCAGGATTAGAATTCTGCTTACCACGAGCATTTCAAAATCCATGGGCCCATCCAACAAGTCAAATTCAGTCTCTCATCAACAAACACCTCAGTCTATCACAGTCTTTCCTCAAGCCCCCAAATCTTATATATCATATGCTGAAAAACAGTCCCAAAATAAATAAGTTAAAATCATATAGATTAGGCAGCGAGGCCTTGCATACAATCGATGCCGCGGTGAGAGAGATGAAATCCACGCAGACAAACAGCCCCAGATTGCAACACGGACCATCCGTCCTCTCTGGTTGGAGTCTCTGTCCTCCTAACTCAACACCACTTGCAACCCCCTTCCCTTCCCACAAAGCATTGCATGTGCATGCAGCTGGTTTTGTGTCCGGTTCTTAGAGGGATCAAACAGTCTCTCTTTTTCTACCCTCTCTGTCCATTTAAAAAGACAATGTCTCTTTTAGGATAAATTACTCAGGAATCGTGTCATCTACCTGCATGCCACAAAGATTTTATATATCCTACTAGACAAAAGTTTCTCTGTCGATGTTTCCCAGATAATTTCACCTGCTGATTTGGCCTTTGCTGAGGTGAAGGGGAGATCTGTGCGTCATACACAGAGCCTCTTCAAACAGACTTGAAGAGAAAGCTTTGTGGCTGCGCATGGTGGCACTTTGACTTTTCGATGCTGTTAGCTGGAGGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGACCAAGAAGTGCTCTGTGTCCCTTAGAAGCTGCATAATGGGAGTTTTCTGAAATTATTTTTTCTCAAAGAATCCTTCTTGCTTCGTGGTGAAGGAGCCTCGGTTTTCACTCCTACCAAATCTTACTCCACATAGCAGGAAGAACCAGGCTGGACACCAATGCTTCTCTTTAATCTTCTCCAACCCTTCTTTACTTTTGCTTCCCACAGAGCTTCAGTACGCAGTTCAGCGAGATCTTCTGTCCTTGTGGGATAAGAATCCCCCTCCTCCACAGCCCTCACTGGCTGCAGTTTTTTTGTTTTTTAATTATTATAATTATCAATACTTATTAGTCATGCAGGTTAATGGGTTCCACGGTGACGTCTCCATGCATTGGAGATGTCCATTATCTTGCTCATCCTCTTCCCCAACCCCTTCCCTTTCCTGGACTCTTCTAGTAGATTCGGGTCATTATTTTTCCTCCTATAAGAGAAATCATACAATGCTAATCTTTTTTTCTGGCTTGTTTTGTTTAACATAATGTCCCCCAGTCCCTCCCATTTTCCTGAAGATGACATGATTTCATTCTTCTTTATGACTGAATAATATTCCATTGTCCATACGCACCATCTTTTCTTGCCCACTCACGTGGTGATGGATGCTTAAGTTGACTACATATATTGGTAGTCACGAGCAGAGCTACAGTAAGCATGGCTATCTCTGTGTCTTATTTCATGTCCTTCTGATAAACTCTCCAGAGTGGCATAGCTGGTGTGGTGCATAGGTTAATACTATTTTTAGCTTGTTTGGAATTCTCCATGTTGTTTACCTCAGTGACTGCACTAATTTACATTCTCAGCATCTACATTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTTGCGCCACCACGCCCGACTCCTCAGCATCTACATTAACAGTACTTCTCCATAGCTTCTCTAGCATTTGAGCTGTCAGTGTAAATATGATTTGCATTTCCCTGGTGGCTACAGACACTGAATGCTGTTCATGTTCACCGACTATGAGCTTCTCCACGTCTTATACACCTTATACACGTCACTCGCCCATTTTCTGATTTAGTTATTTGTTCTTCTTTTTTCCTTTTCTCATTTTATACATGTGTATATATATATATGTATATATATATACATATATATATATTCTGTATCTCAATGCTCTGTTCCATGAATAGCTGCAGAAGATAACCCCCACTGAGTAGGTAGTGTTTTCCCTTCTGAGTTTAGCATGTTCCCACAGTCACCCACCTCTGAAAGGAACTGCTCTCTAGTTGATTTGACTTTCCTCATGAAGAGTAGTGGCTGTTGGCTGCCTCTAACCCGCCATCTTGAATTGCCAAACAGCTGACATTACTTCTCATCTCTGTGTTTTTCCTGTCTGTTTATACCCTGTTAAGTCTTCTCTAAGATGTCTACTACCCTAGGACTCTCACTCAGCATTCTTCCTAGGAGACTTTTACCATCACGGTTCTACCAGTCTAATAAAAATGCAGTATCCCCTTCTCCAAAGGCAGGCTCACCATGGGGTCCTCAGGTCCATAGCATCTCTTCAGCCTCTGCATTCTCACTAGAGTTGTGTTATCAGTGTGCTTGAAATTTATAAGGGGGTGGGGGCTGGCAAGATGGCTCAGAGGTAAGAACACCGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTTACAACCATCTACACTGGCATGTGCTGCCTTCTTCTGGTATGCAAGCCTACATGCAGATAGAACACTCATAAATAAAATAAATAAATATTTAAAAATTTTAAAATGTCATTCATTCAGCATGCATTTATGAAGCACCACTGCATGCACAGTGATAAAGGTACAAGTCTTTTTTATGTAATACAAATATGAATTCTTAAAATATTCTAAAAACTGTTATGATATGAAATTAAGAATCCACTCCAAATCCACAATCCTGAATCTTCTTTATTTTCCAG
Seq C2 exon
TGAAAGGAGTCTTTTCCCTCCCAATTCAAGTGGAGCCAGGCATGGCTCCCGAGGCTCAGCTGCTCATTTATGCTATTTTACCTAATGAAGAACTTGTCGCTGATGCTCAGAATTTTGAAATCGAGAAGTGTTTTGCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-Pzp:NM_007376:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF077039=A2M_N_2=FE(14.1=100)

							
A:
NA

							
C2:
PF077039=A2M_N_2=FE(31.5=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000032510





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000107760
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr12:9409383-9413841 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:101236527-101240477 
Chicken
(galGal4)
chr1:75794521-75795022 
GgaINT0112582
(OVST)
Chicken
(galGal3)
chr1:79437005-79437506 
GgaINT0112582
(A2M)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"