MmuINT0130096 @ mm10
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128486118-128486983:-
Coord C1 exon
chr6:128486893-128486983
Coord A exon
chr6:128486187-128486892
Coord C2 exon
chr6:128486118-128486186
Length
706 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTTCCTCATTCCATCAACAGCTC
3' ss Score
9.51
Exon sequences
Seq C1 exon
CTACACTGGAGAACGACCCAGCTCCAACATGGTCATTGTTGATGTGAAGATGGTATCAGGCTTCATACCTATGAAGCCATCCGTGAAAAAG
Seq A exon
GTAAGCCTAGACCATCAGTAGAAAGAAATCTACTGCCTAAACCATTGGTGAAAAGGGCTAGCCTAAACCATTGGTAGAAAGGGCTAACCTTAAACCATTGGTAGAAAGGACTAACCCTATTGATTTAATTTTATTGATGTAGTTTTTACAGAGCTTACTCCACAAACCTGCCTCTCCAGATTATAATTCTGTCATTTACTACGGTTTATACTGGCTAGGGTGTCTACTTTCTAGCTTCACACTCAATGTACTAGCAAACCATTAGCTATCAGGTATGTGGACTCACTTTCAAAAAAGATGTATATGCACACATATATATGAATATCCTTATACATCCCTAGGATGTGTATATATCACATATATGTATCTATACACATACACATGAATAGAAAGGATTTGATAAGTATCATCATTATGACTAGTATTCCTAAAAGAAATAAAAATCGCAGGGTGTGGTGGAGCACACCTATAATCCAAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGATCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAACAAACATTACAACAAACAGAAATAAAAATCAATAGTTTGTATTCTCCATAGAAGCCTTTACTATGATAAATACCTGCAAACTGCTCCTACCATAAACCTTCCTCATTCCATCAACAG
Seq C2 exon
CTCCAAGACCAGCCTAACATTCAGAGGACTGAAGTGAACACCAACCATGTTCTAATCTACATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359:ENSMUST00000112132:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(25.0=71.0)
A:
NA
C2:
PF076779=A2M_recep=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types