MmuINT0130103 @ mm9
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128469410-128471203:-
Coord C1 exon
chr6:128471119-128471203
Coord A exon
chr6:128469534-128471118
Coord C2 exon
chr6:128469410-128469533
Length
1585 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
CGATCATGTTACTGTTCTAGATA
3' ss Score
8.59
Exon sequences
Seq C1 exon
TTTTACCCAAATTTGAGGTGATAATAAAAATGCAGAAGACTATGGCTTTCCTGGAAGAGGAACTTCCTATAACTGCTTGTGGCGT
Seq A exon
GTGAGTTACTTCTTTTTTCATCTTATTTTTGGTTTTCATATCCTATTTGAGATGGTATTTTAAATAATATTTAGTAAGGCATTCCATATCAGCACTTACAGGCGCTGGACAGGGAGTACAAGCAGAAATCTATGTCCATGAGGCTAAAGAAACAACCTCACAACTGGCCTAAGGGAAGATTCCTATATCGGCTCTACAGGAGGAGCTTAATGAAAATTAGAATCCCTGGTTCCACCTTCAGAAATTCTAGTTACAAATCTAAGGCAAGAGTCACAAACCCTGTACCACAACATGGGTCACAGGGCATTCTAGAACAGGAAACTAGTCCCACCCTTGCCTGGTGCCCTTCCACCATATTCAGCAGAAACAGACTGAGCCACCACGATATTATTTACAAATCATATTTTTATTTTGTAGCCACTGCTTTCCCAAACAATTTCTCACTTATTATTTTAAAATACCTAGAAATATAGTCTTTATCTTTTTCTTTTTTAGTTAAAATAACTAAATCTGACATCAGAGACAATCATTTTTTAACTAATTCTGTGGTATATACATATGTGCTACATACATGAGCAGATGCCCAAGAAGCCTAGAGGTAGTAGAGACATCAGAGACAATCATTTTTTAACTAATTCTGTGGGTATATACATATGTGCTACATACATGAGCAGATGCCCAAGAAGCCTAGAGGTAGTAGAGGCACTGAAGCACTAAAACTGGAATTGCAGGCAGCTGTGAGCCACCCGACACGGGTGCTGGGAACAAAACTCAGGTTGTTTGGAAGAGCGGGAAGCACTCTTATTTTATGTGTATGGGCGTTGTGCCCACACATGTGTCTGTGTCCCACATGCATGCCTGGTGCCTGCAGAGACCAGAAAAGGGCATCAGAGTCCTTGGAAGTTGCAGATGATTCTGAACCATCAGTTGGGTGCTGGGAATTGAACCTGGGTCCTCTGGAGGAGCAGCAAGTGCTCTCTTGTCTACCATCTTTCCAGTGAACAGGACAGTCTTATAGCAGAACCTCAACTAAAAGGAGAGAAAGAGCTGGGTGTGGTGACCTTTAATCCCAGTAATCAGGAGACAGAGGCAAGCAGATCTCTGAATGTACATCAGCCTGGTATAGATAGCAAGTTCTAAGCCAGCCCAGAATACATATTGAGACCTTGTCTCCAAAGCTTAAAAAAAAGAGAGAGAGAGAAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAGAGAAGCAAAAAAAGAAGGAAGGAAGGAACCTTGGGAACACTAAATCGTATCTTTCCATTTAGAGATTTTTCCAAAAGGTTCGCTGACTACTTTGTCTTAAAATTATTTCTCATTTGCACTTAGGATGAAGCCTGGTATCACGAGCCTTACTGGAGTGCAAACACTAGAGAGATAAACAAATATGGTTGAACAGTGTGACTGGGTCCAGTCAGGGAAAGAAACCATCCGTGACACTCACATTCGATCATGTTACTGTTCTAG
Seq C2 exon
ATACACATATGGAAAGCCTGTTCCCGGTCTGGTGACATTGAGAGTGTGCAGAAAATATTCACGATACCGCTCCACCTGCCATAACCAAAACTCAATGAGTATCTGTGAAGAATTCAGCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-Pzp:NM_007376:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTGATAATAAAAATGCAGAAGA
R:
CTGTTGGCTGAATTCTTCACAGA
Band lengths:
196-1781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: