MmuINT0139025 @ mm9
Intron Retention
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89125826-89126460:-
Coord C1 exon
chr15:89126383-89126460
Coord A exon
chr15:89126008-89126382
Coord C2 exon
chr15:89125826-89126007
Length
375 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
ACTGGGTGTCTCCTTTGCAGGGA
3' ss Score
10.32
Exon sequences
Seq C1 exon
TGCCCAGCCCCCGAGCCAGGGTCACCACGCTGTCCAACCCTTTGGCGGCCTCGGCCTCCAGATGGACTGCGTCCCGAG
Seq A exon
GTACTGTACTGGGGCTTTCCCCTTAACTGGAACTGATGGCCCCCTAGTATGAGTCAAGCCATCTTTGGCACTAATATCTCTTTTCACACCCAGCACTAACTGCCCCTATGTGACAGACTAGCACAACTGACTCCTCCTAGCCCTAGTTACTTATCTGCCCAGCACCTGGTCCCGATCTAGACACTAACACAGGCCACCCCCCACCCCCATGTGCCTCAGCATTTGTGTGTTCCAGCCCTCCTCCCTCTTGTGGCCTGCCGACCACTCTGCCCTGCCTGGAAACTCAGTTCCCCTCCCTGGAGGCCAGGCCCAGCCAGCCCCAGGTAAGTGATGCTCTGACCTCAATCTAGCACTTACTGGGTGTCTCCTTTGCAG
Seq C2 exon
GGAAATGGAGCAGTGTCCGAGCCAGTGGTCGAAGCAGTGGTCTTGGTTCTGATGTGGGCTCTCGGCTAGCTGGCAGAGATCTCCTCAGTACTCCCCACACCAACGGAGCTCCACCTGATTCTGGTTTTCTACGGCCACAGCGTGCAGCCCTCTACATCATTGGTGACAAAGCTCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529-Sbf1:NM_001170561:29
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(5.6=100)
A:
NA
C2:
PF066029=Myotub-related=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCCAGGGTCACCAC
R:
TGAGCTGAGCTTTGTCACCAA
Band lengths:
248-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: