MmuINT0139078 @ mm9
Intron Retention
Gene
ENSMUSG00000038095 | Sbno1
Description
sno, strawberry notch homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2384298]
Coordinates
chr5:124845904-124848518:-
Coord C1 exon
chr5:124848421-124848518
Coord A exon
chr5:124846056-124848420
Coord C2 exon
chr5:124845904-124846055
Length
2365 bp
Sequences
Splice sites
5' ss Seq
CAAGTAATG
5' ss Score
2.09
3' ss Seq
GCTTTTTTTTTTTCCCACAGAGG
3' ss Score
11.34
Exon sequences
Seq C1 exon
TGTGTTGTAATTGGTCTTCAGTCTACAGGAGAAGCCAGAACTTTAGAGGCCTTGGAAGAGGGAGGAGGAGAACTAAATGATTTTGTTTCAACTGCCAA
Seq A exon
GTAATGTCTTTACATTTCCTTTTGAATATTAAATTAGATGAACCTTTAGCATTTCCTTTAAAAGTTGTCCTTATCTGAGTTTTCACGGTTCTGTGCTTTTCTTCTTTATAATAAATCTTCTGGGAAATAATAGATCCTGAAATGCTGAGCATTTTGGTGACTTTTCGTAGAGTATTTAGACTAACATCTGGATTTTGTTTTACACATCTTGAAACTGGTTGAACTTTAGATTTAGTGCTGTGTGTTTCAAATAACCCTTGTTTTTTTTGAGTGACACTTAGTTTGACATAATATCATGAAATCTGCTCTAAACATTGAATATTGGGGGGTGGAAAGATGGCTCAGTGTTTAAGCCCATATTGCCCTATTGGACCTGACTTTAGTTCCCAGCACCTATGTAATAACTCTTAGCCCCAGGGTATCTCAGTACCCTCTTGCTATCTCTGAGAGCATGTACCTCATATCCATATACATACATACAATTTCTTTTTAAAATAACATTTTTACAAAGACGAAAAGGTGGAAATTGAAATTGCAACTTCAGAAAGCTTTAAAGCTGATAATTGAAGACCAGACACAATGCCACCTACATGCCTTTGTTCCTAACATTGAGGAGTCATAGGCAGCAGGTCTCTGAGAGTCCAAGGCCATTCTAGGCCATAGTGAGTCACTGTCTTAAAATCCTGAAGGAAAAAAATAGTTAATTGAGGGGACTGGAGAGATGGCTCAGAGTTTAAGAGCACTCAGTGTCTGCTCTTAAAGTGGACCTGCTGTCCATGTGGTTGCTCTCTACCACAACTCCAGTTCCCAGGGCTCAGACTCCCTCTGCTGCCTTTTGAGGGTACTGGGCATTCAAAAAACCATACACAGAAAATAAACCATATACAGAAAAACCATACACAGAAAATAAATTTAAACATTTTTTAAAAAGCTTTATTTATTTTATGTATATGAGTACACTGTAGCTGTACAGGTAATTGTTGGGAATTGAACCTAGGACCTTTGCTTGCTCTGGTCAACCCCGCTCACTCTATTTAACCCACTAGCTCAATTTGGCCCTGCTCTGGCCCTGCTCTGACCTCGTTGCCCTGGTCAGCTCCTCTCACTCAGTCCCTGCTCACTCCGGCCCAAAGATTTATTTATTATTATAAATAAGTACACTGTTGCTGTCTTCAGACTCGCCAGGAGAGGGTGTCAGATCTCTTTACGGGTGGTTGTGAACCAGGTGGTTTTTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGTTCTTACCCGCTGAGCCATCTCACCAGCCCCTTAACAATTTTTTTTTTTTTTTTTTTTTTAATCTTAGAAAATGTTAAGTGATAATAAATTGGCATGATAGCTTTGAGGCTGTCCTGTACCCTTTTGGGGGCCGTGTCCAAGAGCTTTGGGAATTCCTGTCACTGAAAACTGCTTGTGAAATATCTTTCTGTTTTTAATCATTGAGAAACTTCTACTATTTACATGTTAAGCTACCTGAGCAGTATATAATTGCATTTATGTTGTTAGTGTGGTGTGAAGCACACTAAGCTTCAAAGGTATCTTCAAATGTAAATGTAAGATGTATTATAATTGTAAGACATCTTATGATTACACATTGAAGAATGATAATTGAGGTAAGTAAATGTACTATCACTGAAGTTAGTCTCAGTAACCTTTGTTCAGTTTGTTCTTGCTATATTTCCCAGGCCAGTCTTGAATTTCTGGATTTAGGATATCTCCTGCCGAAGTTTCCTTCAATAGTTGTAATTACAGGCAAATAACTATTATGCCCTCCTTAAACCCTTTACTCTTAATAGCTTTTTGTGTATGGATGGCACATGTATGTGTGCACACCTGTGTGTAATGTATGCTCCTGTGTACATACTTGTAGACCGCATGTTGAGTATATTCCATTGCTCTCTCACTCTCTTGAGGAAGGGTCTCTAAACTGAAGCCCTTCCCTTTTAGCTACATTGACTGGCTAGTAAACTCTCAGTCAGGATCAGTTTCTCTGCCCTCCTATGCTTAGGTTACAGGCACATGCAGCCATGCTGTTTTTAATTGGTTTGTTGGGGATTTGAACTCAGGTCTTTATTACTGTTGCAGAACAAGCTCTTACTCATTGAGCCATTTCTTTAGTCTCTGTTCTACTGATTACTGTAAGCGCTACAAAGTATAAGAGATGGGTGTGTGTCTTGCATAATGCTACTGGACAGGCTCCTCTTAAAATTTACTTGAGCTGAGTTATGAAAATTGCTTAAGATTGAAGAAAATGTATTAAATATATCTAGTAAGGATTCCACAGGTGCCACATGAAGAAGTAAGGATCGCTGCTTTTTTTTTTTCCCACAG
Seq C2 exon
AGGGGTATTGCAGTCACTGATTGAAAAACACTTCCCTGCTCCAGACAGGAAGAAACTTTATAGTTTGCTAGGAATCGATTTGACAGCCCCAAGTAACAACAGTTCACCAAGAGATAGTCCTTGTAAAGAAAATAAAATAAAGAAGCGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038095-Sbno1:NM_001081203:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.423
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: