MmuINT0139108 @ mm9
Intron Retention
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:79527065-79529448:-
Coord C1 exon
chr10:79529295-79529448
Coord A exon
chr10:79527242-79529294
Coord C2 exon
chr10:79527065-79527241
Length
2053 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CATGGGCCTTGCTTTTGTAGTGG
3' ss Score
7.45
Exon sequences
Seq C1 exon
GGGCGTGGGTGCCATGGAGATCGTGGCGATGGACATGAAGGTCAGCGGCATGTACATCGCTCGCCAGCTCAGCTTCTCAGGGGTCACCTTCCGAATCGAGGAGATCCCGCTGTCCCCTGCCTTCCAGCAGGTCTATAATCGGGCAGCCCGGCTG
Seq A exon
GTAAGTTGGGCAGTTGTCTGCTCTTGTTGACATGTGTCACACAATCACACTGTAGGTCTATGGTGGGGGTGGAAGCTTCCGGGTTCATGTCAGAGCCACGCCAGCATCAGGTCACCTGGAGCAAGTCTTTGGGTTTGTTTTTTGTTTTCACTTTTACTTTGCATTTGTTTGGTTTCTCAAGACAGGATTTCTCTGTATAGCTCTGCCTGTTCTGGAATGCCCTCTGCTGCTCAGGCTGGCCTCGAACTCAGATATCCGCCAGCTGTGACTAGAGGCATAGATCACCACTGCCTGGCTACTTAAAAAAAAAAAAAAAAAGATTTATGTATTGGGCGGGGTGAGGGGGTACAGCGAACTTTTATTGATGGTATTCAAGAGAGTAGGGAGGACTCTCTAAGCCCCTCCTGTTATCCTGGGAGGATTTGTGTATTCTGATTCTCTGTTCATCCTTGTTTGCCTGCCTGGATGTCTGTGTGAGGTGTCAGAACCCCTGGAACTGCAGTTGTAGACAGTTGTTTGCTGCCGTGCGTGTGGGTGCTAGACTTGAACCAGGATCCTCTAGAGGAGCAGCTCCCCAGCACCCAGCACTTTGATTTTTAGTTCTGAGACTATCTTTTTTTTTGGGGGGGGGGGGGGCTAAGACAGGGTTTCTCTGTATAGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCTTCCCGAGTGCTAGGATTAAAGGTGTGCACCACCATGCCCAGCTAGTTCTGAGACTATCTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGACTGCTTCTGCCTCCTGAGTGCTGGGATTAAAGGCATGTGCCATCACGCCCGGCCTTTCTGAGGCTATCTTATCTCACTGTAACCCAGTTGTCCCAATCCTCCTGCCTCAGCCACCCATGTGCTATGGATAGTAAGAGGCATGTATCAGAACTCCTGGCCTTTGCCTGAAGGAGTCACAGCTATGACACTGGCAGTTCTGCCCCGGTCCTGGGACTCCCAAGCATGTTGTCCTAGATGGTGACATGGGGCCAGTGACCATGTCCAGCCTCCCTGTGGCTGTGGGCACTGTCTGGACTAGTTCCTGTTCCCACCCTAGCCCTCCTGCCTCTGTTACCAAGTGCTAACATGACAGGCGTGCACCATTACCCCCAGCTTGTCTACTGTGTGCAAGGCCCTGAGTTTAACCCCAGCACCACAAAATACAAAAGAACAAATTGGGTGTGGTGTCACACTGCTGTCACCCAGACACTCAGGAATCATGGGCCAGCTGTATTGGAGAACAAAACAAAGAGTCAGCATGACCAGCAGTGGATGCCTACAGTGTCTGCCTCTGTGAGCGTTCATCTCTAGGACAAATGTAGCTGTCCTGACAGGGAACTCCTGGCAAGGATGGTGTGGCGGCTGGGGCGCTGCTCAGGGCCTTGCAGGGTCAGGCTGCTCTCCTGGTGCCCAGGAGGCCTTGAATTCAGCTGCCCTGTAGAAACTCTGAAACTAGGTGTGGGGGACTCATGCCTGTCATTCCAGCACGTGGAAGGTAGAGGCAGGAGGATCAGAAATTGAAGGTTATCATAGGCTACATACCCAGCTCAAGGCCAGCCCTCTTCCCCAGTAAGTCAGACATAGAGAAAATCTGTGGTCTCAGTGTCCAGGAGGCTGGAAGGCTGAAGCAAGGGATCAGGAGTTCAAGGCCAGCCTGGGCTACCTGAGATTCTTAATCAAATAGCAAAAATGGCCCTCCCCAGCCCCAGGCTTGTTTTCTTTTTTTGAGCAGTTCTTTGAGAACTGTGAGTGTGAATGGATGTATGGGTTTCTGGAATCTGCCCTGCGCTCTGGCTCTACCATCCTCACTGTACTTCCCTCCCTCACCAGTCCTCACCCCACATGCCACCTGCCCCAGTCCCCGCCAAAGACTGGCTGTCACCCTCAGCATGGGCCTTGCTTTTGTAG
Seq C2 exon
TGGGCCGAGGCCCTGAGCGTGTTCCAGCAGGCAGCTGACTGGATCGGCCTGGAGTCTCGCAAGTCCCTGTGGGGTCAGTTCTGGTCAGCGCACCAGCGCTTCTTTAAGTACCTGTGCATCGCAGCCAAAGTGCACCGGCTAGTGGAGCTGGCACAGCAGGAGCTGAGCAGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673-Sbno2:NM_183426:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138721=AAA_34=PD(16.3=92.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: