MmuINT0140954 @ mm9
Intron Retention
Gene
ENSMUSG00000026581 | Sell
Description
selectin, lymphocyte [Source:MGI Symbol;Acc:MGI:98279]
Coordinates
chr1:165995433-165996448:+
Coord C1 exon
chr1:165995433-165995819
Coord A exon
chr1:165995820-165996340
Coord C2 exon
chr1:165996341-165996448
Length
521 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTTGTGTAATCTGCTTAAAGCCT
3' ss Score
3.61
Exon sequences
Seq C1 exon
ACTTCCTGATACACCATGGAACTCACTGTTGGACTTACCATTATTCTGAAAAGCCCATGAACTGGGAAAATGCTAGAAAGTTCTGCAAGCAAAATTACACAGATTTAGTCGCCATACAAAACAAGAGAGAAATTGAGTATTTAGAGAATACATTGCCCAAAAGCCCTTATTACTACTGGATAGGAATCAGGAAAATTGGGAAAATGTGGACATGGGTGGGAACCAACAAAACTCTCACTAAAGAAGCAGAGAACTGGGGTGCTGGGGAGCCCAACAACAAGAAGTCCAAGGAGGACTGTGTGGAGATCTATATCAAGAGGGAACGAGACTCTGGGAAATGGAACGATGACGCCTGTCACAAACGAAAGGCAGCTCTCTGCTACACAG
Seq A exon
GTAGGCAGTGTCTAGGCTCCTACGCTGATGTGGGACCACCATAGTTAGAGTAATAAGACTCATTACCCAGAAACTGCTATTCTGGGTTCTAAAACAATCCTAACTAAGCCTTAAGCATAGCACCTCTGGGCAATCTGCAGGTACACAACAACTAAATAACGTTCTATCCAGGTTGTAAGTGTGTTATGTGGGGAACAGGGATGGACAGACTGTGCCTCAAGGACAGACAGGAAGAGGATGCTGAAAGCTAGGTGGTCTTTGAGGGCTTTTCTCTAACACCTCCTAATCATATAGACAATTTCTGTGAGTTAATTCATTCTAAAAGCAGACAAACGCCTACAGCCAAGTGGCTATTGTATCTTATAAATTAAAAGTGTAGCGTGCGTTATGCAAAAATGTTTTGAATACTTAAGCAAATTTTTCTTGTTCATTATAATAGTGTCAAACAAAAAAGTTCTTTGTGCAAAGAAGAGACTCTGGATGTAATCACATTAAAATGTCTTTGTGTAATCTGCTTAAAG
Seq C2 exon
CCTCTTGCCAGCCAGGGTCTTGCAATGGCCGTGGAGAATGTGTGGAAACTATCAACAATCACACGTGCATCTGTGATGCAGGGTATTACGGGCCCCAGTGTCAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026581-Sell:NM_011346:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=WD(100=86.2)
A:
NA
C2:
PF079748=EGF_2=WD(100=86.5),PF0008415=Sushi=PU(4.7=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATACATTGCCCAAAAGCCCT
R:
CTGACACTGGGGCCCGTAATA
Band lengths:
347-868
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: