MmuINT0143115 @ mm9
Intron Retention
Gene
ENSMUSG00000037062 | Sh3glb1
Description
SH3-domain GRB2-like B1 (endophilin) [Source:MGI Symbol;Acc:MGI:1859730]
Coordinates
chr3:144368477-144369695:-
Coord C1 exon
chr3:144369562-144369695
Coord A exon
chr3:144368570-144369561
Coord C2 exon
chr3:144368477-144368569
Length
992 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TTCTTTTTGATTATTTATAGAAA
3' ss Score
7.19
Exon sequences
Seq C1 exon
GAAATGCCCTTATTAAATGTGGAGAAACACAGAAGCGAATTGGAACAGCTGACCGAGAGCTGATTCAAACATCAGCCTTAAATTTCCTCACTCCTTTAAGAAACTTTATAGAAGGGGATTACAAAACAATCGCA
Seq A exon
GTAAGTAGGAAAATGATCCATTTGTCGCAAGATTTAGACTTCTGCTTTGTCTTTGATGAATAATCCACCCTCTTAGTTATGGTAAATGTTACAGATTCAAATGCTTAAATATTCTAAATAGGTGCACACTCACCAGAATACAAACTAAACTTCAAGAAAAAGCTTTTCGTAACATAATCCCCAGTCTTTAGCCCTACCTTTAAATCTGTGGAGAAATTCCTGGAATAACTATGAAAATAAAATATTGCTATAGTATACTTGCATGTTAATTTAAACTAACTAGAAACCTAAATATCGTAAATTGTATTTCTGTTCCATACTTTAGCTATATATTCCAAGAAGTGTATTGTTTTTGAAATGCTATTCATTGCTGAAGCATAAACGTTTATGTTGTCACTTTCTTTATAAACTTAGTCTGTTCGTCCAGAAAGCTTGTCTCATCACTGACAGAGAATAGAAGCTCTTGGTCACTGTTTCTTCCTAAGACTTTCTCAGTGCTACCCATTGTTATACATATAACCCTATCTATATTGCATACTACAGTTATCCTAGGACATTTCAGTATATTTACCGTGTTTTACTTCTGTGAACATCAGTAGTCTGGGCTTTACTTAAATTGAAATTACTAAAAAAAAATACTAGCTTAAGCTCAGAATATGGCTCAGTGTTTGCCTAGCATGATAAAATTGGGTTCAGTCCCTCCATTAAAAATAATAATATGTCAGTAGGATGAAATCTGATACATGGAATATAAAAATGAAGAAAAAGGACTCTATTACAGTTATTATAAAGTATTGTGTAGAAACTTGAATTGCTATTAACAACAATATACTGTTTATATATTATTCGGTCTGTAAATTTTAAATTCTGTTTTGTAGTAGTTGAGTTACATTTAGTGGTGTGACATATTAAGAACAACTGGCCCAATGTATAGATGGCCTTACAGATTTTAGTGTTCTTGGCTTTACTTTATTCTTTTTGATTATTTATAG
Seq C2 exon
AAAGAAAGGAAACTATTACAGAATAAGAGACTGGATTTGGATGCTGCAAAAACAAGACTAAAAAAGGCAAAAGCTGCAGAAACTAAAAGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037062-Sh3glb1:NM_019464:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(17.9=100)
A:
NA
C2:
PF0311413=BAR=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTTATTAAATGTGGAGAAACAC
R:
GAACTTTTAGTTTCTGCAGCTTTTGC
Band lengths:
222-1214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: