MmuINT0145897 @ mm9
Intron Retention
Gene
ENSMUSG00000031808 | Slc27a1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Coordinates
chr8:74092826-74093347:+
Coord C1 exon
chr8:74092826-74092922
Coord A exon
chr8:74092923-74093240
Coord C2 exon
chr8:74093241-74093347
Length
318 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
3' ss Seq
TCAAAGAGCTGCCTTTGCAGCTC
3' ss Score
2.28
Exon sequences
Seq C1 exon
ATCCCCTGAAGGGACCCACCAGCTAGGCCTGAGCTCAGAACTTCCCAGTCCAGACTTCTGTGAGAACCTGCGAGGGAGCAGCAAGGGCCAGGGATCT
Seq A exon
GTAAGCCTCAGAAGGTCATCTTGACAGCAAGGGTGGGGGCACCCCAGCAAGAGGCTAGGGATTGGGGCGCCTCTGGATAGGCGCTTAGGATTCTGGAATGCTAACATGGCTTGAGGGGGCTCTTGCCTTTGGGGAGCAACAAGAGATTCTGGGGTGCATTACGGTCTCTTGGGGGTGCTCCTGGCGTGCAAGAAAGGGTCATGTCGAGGGAGGATGGGAGCTGATGTGAGCCCTGGGGTAATGGGATGTGACTTGTTAAGGTTTGGGAGGTAGAATTGGGATTTGGGGGCTCCTTATCTCAAAGAGCTGCCTTTGCAG
Seq C2 exon
CTCTCTCCACCCCCGGGTGTGAATTTCGACTTTCTCGGAGTCTGGAATGCTGAGAAGCCTCGGGGCTTGGATCTAGGACAAGCTGGATCAGGCAAGCTCCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031808-Slc27a1:NM_011977:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGGACCCACCAGCTAG
R:
TGTGCTGGAGCTTGCCTGATC
Band lengths:
198-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: