MmuINT0146117 @ mm10
Intron Retention
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:27025901-27027303:-
Coord C1 exon
chr2:27027141-27027303
Coord A exon
chr2:27026108-27027140
Coord C2 exon
chr2:27025901-27026107
Length
1033 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
ATCTTCTTGTACCCCTGCAGTCC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GGCCTTGAAAAACAGAAGGGTGTTCCTGGCTACCTTCGCCGCTGTGCTGGGCAATTTCAGCTTTGGGTATGCCTTGGTCTACACATCTCCAGTCATCCCTGAACTGAAGCTCTCTTCTGACCCAGCACTACACCTGGACAAAATCCAGGCATCCTGGTTTGGG
Seq A exon
GTGAGGCCTGTTCTCTAAATCAGATGGGGTAGTGGAGGGAGCATGGGCCCACTCAACCTGCTTACCACAGGGAACTAAAATCACCTAGCCTTGGAACCTCCCCTAGAGCACCGGTATCTCTCCCTAACACGCATTCCCGTCTGCTAGCGGTGATGGCAAGTGACATGAGGAAGTGACATCCTGCAGAGATGTGGGCCAGGGCTGAGGGGAAGATTTCCCAACCCCATACCCAAAGCCAGGCTGCCACAGCAGAGCTGACATCCTCCTGGGTGCCTGGAGGCAGTCACACCAGATGCTAGCGGGATGAGAGGTGCCATATGGACAAGGACAGAACGTGGCTAAACAGAGCCCAGGAGCCCAAGACTTTAACGTTAGAATGTCAGTAGACCCTGAGTTAGGACTGCGACTTGACAGCAAAGCTGGAAAGATTTGGGGTCTCCTGAGCATTTCAAATGGGGTGGGAATGTGCAAGGCGCACAGCACATGCTGAGCACATGCTAGACACTTCGTGAAATATCTTCACCCCTGAGGTTAACTATGTTTTTCCCATAACGCAACTAAGAAACTGAGGCCACACTGTGTGCCCTGGTCCCACTGCTCATGAGTGGCAGACTCCAGCCAAATTCTTTATTCCTCAACAACTCCAATGACCCCCAAATCTTAAAGTCCCAGGCCTACAAGTCATAGGGTTCTCTTTGGTAGTGTGTGAGCCATAGAAAATGCCTTTAACTTCAGCACTTGGGAGGCTGAAGGAGGAAGATCATGTTCTTGAGGCCTGCTTGGGCTCAAAAAAATATTGGACACTCCTGGACAGAGCCACTGTAGACAGGCGCCCCCTCTCCTCAAAGCACCTCTGGAGTAGAACATTTATGGTACCTTTACATATAGTTGTCCACAGGCTGCTGTGCACCTCTGCCAACAGGGGACTCTACCAATGAATGCCTGGGTTTTGGGTCAGCTCTGGAGGAACTCTCTCTAGACTCCGGTGGGGGTGAGAGCTCTTAAAGCCACTTATCTTCTTGTACCCCTGCAG
Seq C2 exon
TCCGTGTTCACCTTGGGTGCCGCAGCAGGGGGCCTCAGTGCTATGTTACTCAATGACCTCCTGGGCCGGAAGCTCAGCATCATGTTCTCAGCTGTCCCCTCAGCCATTGGCTATGCAATCATGGCCGGTGCCCGTGGCCTCTGGATGCTTCTGTTGGGGAGGATGCTGACGGGCTTTGCCGGGGGACTCACTGCTGCCTGCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067:ENSMUST00000045702:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(10.0=81.8)
A:
NA
C2:
PF0008319=Sugar_tr=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTGTTCCTGGCTACCTTC
R:
GCAGGCAGCAGTGAGTCC
Band lengths:
348-1381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types