MmuINT0147084 @ mm10
Intron Retention
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62281874-62286963:+
Coord C1 exon
chr2:62281874-62281979
Coord A exon
chr2:62281980-62286801
Coord C2 exon
chr2:62286802-62286963
Length
4822 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGTGTTTCCCTTCCTCTCAGGAG
3' ss Score
10.42
Exon sequences
Seq C1 exon
ATGTAACTGTATGGAGCCACATAGTCCCAGCAATGACACACTGAAGGAATGGCGGGAGTCCAACCTTTCTGCCTCTGACATAATCTGGGGGAACCTAACTGTGTCA
Seq A exon
GTAAGTAAAACATGGCAAAGGAACTCAAATCTGAGTCATTTACTGTCAAGACCTTTATTAGCATTTTTAATCAGTTATTGTGACTAAGTTAAGAATTTTGGAAATACAAACTTATACAAGTGATAGCTTTGTTTTAAAGTTCCCCAATTCAGATATCTGCCCATAACTGGGGCTTTTCATTCCTTTCTTTTCATAGACCTGCATCCCTCTGAAAGTTTACAGAAACAGAAGAAGGGTACACGTCAACTAAAAACATTAAATACTAATTAAAAGAAAAAGTTCTCTTTGTTTCTCAACAGATTCCTAACTTCTATTTTTATTCTGAATTCTACTAAAAAAAAAAAAGATAGGCTAGATCCATATTTCTACGTATAGTGGTTGAATTCTGTACCTGTGTTTTATTTCCTTATGCCTTTATTTGTAAATGTTTTCTCATGGGAACATTTCTCAGTTCTTACTCTTTACTTCATGTGTGAACATCTCTTAGACTCTGTATTCACAGGCTTCACTCATTTCTGTTCAGTGAAAACATAAAATTTGGGTAAAACCCAAGTGTTCTGCTTTAAAATAAGTATAAAAATCCCTGAGTAGCCCCACTTTCTTTCTGTTTCTTTCACTTATAATCATTACTATCCAAAACCTTTACCACCCTACCTACCTGTATGTTCTCAAATTTCTTTATAGCCATCAGCACAAACAAATTCTACTTCATTTGATTAATCACATACTATTTTAGTAAGTGATACAGTTAATGGAACATAGAAATATTTTGCTATAAAATCTCATAAGCCTTTAAATATATTATTTGAGAAGGATATGACCTTCTACCTTTATATATTGGGATTATAATATAATTACATTTCTCCCTCCCCTTTCTTTCCTGCAAGCGTTCCCATATATCCCTCCTTGCACTCTTAAAATTCATGGCCTCTTTTCTATTAGTCATATTACATGCATATATTAAATAGTTTAAGCTATGTCCAAGTATTCTTTAGAATAGTTGACTTGGAGATATTTTTGACTATACTCATGTATGCTTACAGAGTCAGAAATCTAAGTATACCAGCTTGCCATAAAGTTGAATTAAATAGCAAACATTTGAGTGAACATTGTTCAACATAATCATTTGGTGTTTATCAAACATTTGACCCTTTGATTTTGGTTCTTTCCCCTTACTGAGGTATATTCTGTTGTATATGTTCTTTCAGAATTAAAAATCAATTTACTTATTCTTGGTTTACAATTTAATCTTGACCTATATTTTATGATCTTTGTTTTCTCCTGCTCTCTGTCTCTCTTTAATCTTGACCTATATTTTATGATCTTTATTTTCTCCTGCTCTCTGTCTCTCTGTCTCTCTGTGTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACACATTAATGTTAAAATTTGTAGGTTACAAATTTTGCTTTTTACATCTAGGCATCTTGAAAACAGCAGAGCCCCTTGCGTTTCTTTAGAATAAACCTCCACTTACTCTTGTCTGCTGTTGTGGTCAACATTTATTCTTTTCAACCTATATTTCCCTAGAAAAGTAATGCAACCAGGGTTCTTGTTTCCAGAAAACCATTTAAATTAATCAGTAAAGGAAGTGATGGTGTGAACAAGAAAGGACAATGCAAATTTAGTGAGAAATTAGATCTGGGGTTGTGGTGGGGTCATGGTGAAATCATGGTGGAGTCATAGTGAGGTCATGGTAGGTGTGTAGGCAGTGAGTGGTGTGCTTTATCTACAAAGCTTCATTTTGGGTCACGTATTTCTATTTTCTCTTGATCACAAATTCAAAATAATCCAGTCTGAATTATTCAACCAAATTAAGTCATGTGTTGTTTTTCTCTAAATCATTTAATGCAAAATAGTAAAATTTATTCTATACATTAGCCAATCCAATTGATGATGTTAGCCACAAGTGAGTTATTTCAATTTTTTGCTTAAGAATTTTTAGTCAATATATCTAACAGTGTCTCCCTTTCCCCTCTTCATACAGAGCCTCCCACCTCTCTACCCACCCACCCTTTGAAAATAGAAGTTTTTGTACAATTAGAGGGTTATAAAAATATTTTAGATGCAAAACAAATTTAACACTTTATGCCTTATTTTAATTTTTAAAGTTCTCTACTATGAATTAATGTTACATAAGAAATGTCATATCATTTTCATCAGTTAATAGCAGATATTATTTTATTTCATCATAATATATCTTATAATTACTAACTTATACCTTGATAACTCAGTAAGGCAGAGAATCAAAATCAAAGGGCTAAATGTTTGGTAAACACCAAATGATTATGTTGAACTACGTTCACCTCACGTTTACTGTTTAATTCAACTTTATGGCAAGCTAATAGACTTAGACTTCTGTCTCTGTGCACTTACACAAGTACATCAGGAACATCTCAAAGCAAGGAGGGATATATGGAAATGTTTGGAGGAAGGAGGGGAGAGGGGAAATGTAATGGTATTATAATTATTGTTATTATATTGTAATTATATTTTAATTACATTGTAATTTCAAAAATCTTTAAAAACTAAAAAAGAAGGGAAAGTAATTATCAATTGCTTGAAATTTGTTTCAATGCTTTTTAGTCTCTTTCTATACATATATATATATATATATATATACATTTGAAAAGACATTAATAATTTCACATTCATATCTTCAAAATATACTAATAATTTCTATTTTAATTTTTACCAATTTATAGAATTGTTGAAATAGAATGTGTTGGAAGAGTAATTAGAATCTGTCAGCAAGTATCTTTTGAGTACTTACTATATTGTAAACCATGATAGACTAAAATGAAAGAAAGGCTTTGAAGTTTGTTTGCACGTCCAAAGGACTCCTTTTTCCCCTGTCTCTCTGTCTCTTCATTTCTTTGACTCTATCTCTGACTCTGTTTCTATCCCAAACCCCTCTCACTCTGTGTGTGTGTGGGGGGGGGGGGGTATATGTTGGACATGTAGATAGTATAAAGCTGAAAATAAATGTTGAATTCTGTAGTTACTTTTTACCTACAGAATTTACTTTTTAGAATCAGAGCCCCACCCTTGTTTCCTTGAAAAACAAGAAATAATAATACTTTACAGTTTGCTTTGAGTTGAGATAGCTAGCCTTGGCATTGGCGGTTATAGATAGGCAGTTGAATAATCTTTTCTTGCATCTGGCTTCTTAGGAGTAGAGCATCTGACCCACCTACATCCAAAGAATTCATAGAAGCCTTTCAGACATGCACAAAAGACTGCAGGTGCTCACAAATCACTATGTGCTGTGTGGGACTCCCACTTCCTCTGCTTAGACATCCTGGTGCACGTAACACTGCTTAGCAATTGTTCCAAGCATTTCTAAATGCACACAAAAAGAGACTGGAAATGTCAAAGATTTTTTTTCAAAATTTATTTATTAAGTTTAAGAAGGAAAATTAAAGCTATAAATAAGGCTAAGAGGTTTATTATTATTATTATTATCATTATTATTATTATTATGCAGTTCTTCAGTAGCTTAGTTTCTGTTCTCTGAATCATCTTAACATGAATAATTGAAATTTAGCTAATAATAAAGACAGTGTGGTGTCTGTTACATGGCTCTAAGTTATTCTGATTTTTCAAGAACCTTTAGACTCAGTACCTATGTCAAGAAGAAGTTGGTTGTTGCTTGCTTCCGGATGACAATGTGGCCACTTATTTATTTTAAATATTTCGGAGGAGTTTGTTTTATTCTAGAGTGAACTCAGGCGCTTGAAGTTTGGTTCAGTGAAAACAGCATATCTCTAAATTTTCTTTGACTATTCCACAAAGCAAGTCTTGTTCAGGGTCACAATACCTAGATGAATAAAAATTTTCCTGGCTTCTTTAAGCTGATATTTTCTATTTGTTTTGAATACAGTAATATAATTTTTAGAATATGAACGTTTTCCAAGATGACTTAGAAATATTTTTTCCTTTCAAAATATTTAATGCTTACATAAAATGCTGTTTTTCCCCCTTGAAGTTCTTTTTGACTTTGCTGCCACCTAATGGCTAAGACAGTAATTAATTTTTTTCTTTTTCTTTTTCTTTTCTTTTTTTTTTTTAACCTTTTTTTCCCCTTAAAAAACAAAACATAACAAACAAACATAAAAGCAGAAGAAATTCCGTGGGAAAGCAGAGCAAGCATGACCCTCTCCTTGTTCATGTAGGAATTTCTTTATCATTTCTTATTTGAATTCAACAATTACCGTATACGATTCAAATTTCCATTTCTTTAAATATATATCATCATTTTTGTTATCTTTCATAGCCTTCTTAGTATTGTTGAACTAGTTTTTAAAAATAATTACTGTTCTGCACTAGTCTATAATGCCTACCACAAGAGCGGTGCATGTACCCAGCTCTACCACATAGCATTAGTGAGGCTGAAAAAACATTGCTTAGTTTCTCCATGTCTCAGCTTTCTCTGGTATCAAATATAAATGAAAATATCTGTCTATGGTGTTGGTGTGAAAAAAACTAAAATGACATATTTAAATGCTTTATTATATTTCTGATGTTAGTACAAACTACATTATCAAACTTATCACATTTAAAATATATCTGTTATCTTGAACTTAATCGATGTCAGATTTAAACCCTATCCAAGTAGAACTTGAAATCAAGTGTCATACCTCTTAAGTTCTCTGTGGGAGCCATGGGTGAGCAGTCTAGGTGTCTCAGCTGCGTTTGATAGGGTGTTAGTTTTCTGAAAGAAATGCACTAAGTGTTCTTTACCAGTTGTGTTTCCCTTCCTCTCAG
Seq C2 exon
GAGTGCAGATCACTGCACGGGGAGTATGTCGGGCGAGCCTGTGGCCATGGCCACCCCTACGTGCCAGATGTTCTCTTCTGGTCGGTGATCCTGTTCTTCTCCACAGTTACCATGTCAGCCACCCTGAAGCAGTTCAAGACCAGCCGCTATTTCCCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904:ENSMUST00000102735:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(6.8=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types