MmuINT0147186 @ mm9
Intron Retention
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89599776-89608869:+
Coord C1 exon
chr5:89599776-89599846
Coord A exon
chr5:89599847-89608677
Coord C2 exon
chr5:89608678-89608869
Length
8831 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CCTTCCTGTTTTCTTTTCAGTAC
3' ss Score
11.14
Exon sequences
Seq C1 exon
TTAATCTCTCAGTATCTAATGATACCACACTAGCCCCAGAGGACCTGCCGACCATTTCTTCTACTGACATG
Seq A exon
GTAAGTGACTTGATATTTCAAACTACCTGCACAGTTTGTAGTGTATATGGGCTGCTATGCGGTCTCCACTTAGCAAAGCTAATCATCACTGCCCATAGAGGGAACAAACAGAATGTCAGCTTTAAGTTAGCGTTTCATTCCCTTTAAGAAATACGAAACCAAAATTTATTCATATAACATTCTTTTCAAACCTTCTTAAGGACCTAACTGCTATTCATTGTGACCTTGCAATATTTCCACAAGGGCAAAGAGAGTATTGGAAAACAAGAGCCAGTGTTGTCTGCTTCTGGCCAGGCTAGGGTCTTGTCTGACTGAAGTGATGGCACCGTCTTCCCTTCCCTAAGGGTGCTCAGACCAAGACATTTCCCCCATTACTTAGAAAGGACTGAGTATCCATCACACAGTGTCCTTTCCCATGGCTTGTAACCAGGGACCCTTAAGGCCCTGGAATTAAGTTTTTGAAATGAGCTGTTTTGCATGGAAGGTCACAGGCTGGAAGACAACTTTTATATTGGAGAAAATGAGGAAAGTGCTGTTTCAGGCTTCCGATTGTTCCTTCAATGCCAAATATGGAAGCCAACCAAAGAATATCAATCTCTCAGTTACAAAGACAGAAAACATAATACCTTGTATTGAGAGAGTGCCCATCTCTCAGGAGACCAGAACACTTCTGCAGATATTGTGAGCCAGTGCCCAGAGCATCTCTAAGAGATGCTGTTTGTGTCTGTCCTGGGCAGTTCTCACATGGCATCTCCCCCACTCCCTCCCTCCCCCCTCTCTCTCTTGCTCTTGTATTCTCTGGTTCTTCTGACTTCATTCCTTACCATTAGAACTCTCTGACTTTTTTCAAACCTTACATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTTCTCTCTCCTTCTGTGTGTATGTAGGGGACAGTGGGCAAGAACATATCTACATGTTGAAAATCACTATGGAAGAATTCAAATTTAATTTCTTTGCCAGCCAACCCAGAAGGACTTGCCTAAAACAGAGGCAGAAATGCTTCCTTCTAGGTTTTAAAGATTTTTTAATTAAAATTCTTTGTGTGCTTTAAAAGGAAACCAATAAAAACCTAAGTTCATTTGAAATAATAATAATTAAAAAAAGATTAAAGACATTTGCTTTTACATTGCTTCCTACCCTCGCAGATACCACAGGGGCCAATTCGGCAGAAAGCCGGCAAGGAGCAGAACAGCTGCTTGCAGCCAGTGTTACTGTCCTCAGATCTGATCCCCATTGGCCTGTTGTCCCCCAGTAACTGTGACAAGAGGCAGTGAGGACTTGGTAGCTATGACTTCTGAGAGGCACAAGTTCTGTGTTTGCTGAGCTACACTGTCTCTGCTTCCCTGTACTCTTCCTGGGACACACAGTCATCAGGACTTAATTTTCCTTTTCCTTTCATCCATAATTAAGCTATGAGAGAAGGTTCAGTCAAGGTGCCCTGCAGCCCCTGGCCAGGGAGCCTTCCTCTCCTAAGGCCCCAGGAACCAGGTGTGAGAGGAGAAAAGGCCTCTCCCTTCATCCTCATTAGCAGTGAGACAAGCTCTCCTCCTGTGCAGTAGGCATGTCTCAGGGGAAAGAGCAGGGAAGAGGGGCATTCCGGGACGGATGAAGGAAGTATTTCCAAGTCTTCTCATTTGTTACTGAAATCCTTTCATCTTCACTTCTGCCACTTTTCCTGTGGGTGCATTGCTGCCTGTTTCTCGCTCCATAACAAATTCTTTACATAGTCACCGAAAAGAAGCTTTGAGAGGCGCTGTCGCTGATGAATTCTCCACCTCAATGAGTTAGCATCTATGGATTTCAGCTTCAAGATCCAGGAGACCACTGTTATATCAGTATCCCCAAGAGGTGTATGAAAGAATCGCTTAGCATTTGGTCTGTACACGAGAGATTCCTCTCCGTCCTTATTTTAAGTTCATTAGAGGGATCCCTTTAACACACAGCTCTGACGTGGTAAATTTGGTGAGTTTTACAGCAGCACATTCCACATACAATGAAGACATAGAACATTTCCTGTGTCTCAAGAAGCCCCATGGAGTACTCTGTTGTCTTGGTTACATCCAAGCTTCCTGAGCAGAAAGACCATCCTTTGCTTCTCTGCTGTCCTGCCCTTCAGAGGACAAATGTCTTAGTCCTTAGAAGTCACGGAATACAGTGGGCACCCAATGCTCGTCAGTCTCTTTTACTATGAGGTACTTGTAATATTTCAGTTTAATCTGTTTAAATTTCTTTGCATCCTCATCTCTGGTGGATTTTAAACTCTGGTTTTGCAAACTACCCAGCTTCCTTTGCATGTTAGTCTGGGAGCAGTGGTTTCAAATTTTCAGAAATACAATCTTATTCACAAGCAGAATAACCATTATCAAACTTCACCATTTGGGAGCTGGAGAGATGGCTCAGCAGTTAAGAGCTCTGGCTACTCTTCCAGAGGTTCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTTTTCTAGAGTGTCTGAAGACAGCTACAGTGCACTCATATAAATAAAATAAATGAATCTCTTAAAAAATTTTTGTAAAAATTTGAACAACTGCAGCACAAATATATGCAGTATATGATAAAGTGAGATTGGAGATCATGCAAATATAGCTTGCCCAGGTGGGAAAAGCTCTAAGTGAAAAGATCAGCTACTTCTCCTTGAAGCTCCTGTCTATAATATACCTGTTAACTAAGAGCACATATTTTACCAGTGTTTGTGTATTGAAGAAGAGTGTAGACCAGTGGCTCTCAACCTTTCTAATACAGTTTCTCATGTTGTGTTGACCCCAACTAAAATTATTTTCATGTTACTTTATAATTGTGATTTTGCTACTGTTATGAGTCACAGTTCTATGTCTTTTGGTGGTCTTAGGCAACCCCAGTGAAAGGGTTGTTCAACCCCCAAAGGGGTTGCACCCCGCAGTCTGAGAGCTGCTGAAGAAGACATTTATTATTTTTTACTTGTTGCTTGTTATGCTCCCCAGTGGAATTAACAATCCCTACACTGGTGATTCTGTTAATCATAAGAGTAAGAACCATTACAGTCACATAATTCTAAGGATGGTCAGCCATAGAAACAATAGTGGTGCCATGCGATGTTCCTTCAGGGTGAGCAGAGCAGTTAGCATGTATTTCATGGGAAACGGAAATTCATATTAATCTTCTTATATATGACATATTAATATTCTTATCCTTGAGGTTTTTTTTCCCACTGAAAAGTTCAGGCATGTCACCTGGGCCACTACAGTCATGTCACCTGGGCCCCCACAGGCATGTCACTTGGGCCCCCACAGGCATGTCACCTGGGCCCCCACAGGCATGTCACTTGGGCCCCCACAGGCATGTCACCTGGGCCCCCACAGGCATGTCACTTGGGCCCCCACAGACATGTCACCTGGGCTCAATGATTACCTACCTTTGTCTCTTCTAGCTCATGTTTCTTACTCTTTGGGAGGAGATAGTATGGTACTTTATTTTTTATTAAAATCTTTATATTTTTAAGACTTGTGGGCAAATCCACTTAGCATAAGCAGGGTAATTCTCTTGAAAATGAGATGCAGAAAGATGACTTGACGTCTCTTTTCAGGAGATGTTCTTTCTCGACATCATCAGCTGCTTGATGTTCTCTTCTTTAAACCTTTTTCTCGCTGCGCTTCCTATGATGTGGTTCACCCCACCCGATTGGTCACATGTAGCTAACTCCTCCTTTATGGCTCTGTGTTTCTCCACATGAGCATCTCTGCTCACTGTGTCTGCTCAGACATGAAGCCATGTGCATCCAAGTCCCTTGCTCGTTTTCCGCATCCACTGGCTTTGTTCCCTGTTATTTCTTAGCTTCGTGGTCCTTTCTTCTTCTTCCCTTGGAGATGGAAGCATTGTGAGCCTGTTCCTGCCCTCAGGGCTCAGTGTAAATTTTGTCTTCTCTGCACTCAGTGAAGTAGACTGCCTCCCCTTCTGCTGTCCTAACCACACACTTACACTCTCTTTACCGCCTTGTGTTATTAAGTAATTTCTGAGCAAACACTTTATTTCTCTAAGGTGACTTGTAAACATTGTTGCTATTTCTTTAATCTTTTTTTACTCCCTTAAAACTTAGGTTAGTTCATTCACGTGTTTGGAGTCAGTGCATTCTCGATTTCCCTACGGAAGCTTATTTTAATTTTCCACTGGCTATTGTTATTCACATATCATATAACTAAATGAGATAGCCTTGCCAGAATTAACAAACAAAATATGGAATATTCAATTGCATTTGAATGCCAGATGAATATTAAATAATTTTTAGTGTATGTTCTGAACATTGCATAGAACGTTATTACACTAAAAATAGTCATTGATAAGGGTGAGTGTTAACTGAGGACCTGGTATTTTACCTAGCCATTTTAAATCGAAAGTTTAGTTTAAATACATTTCTTCTTTGAATATGACATATATTCCAGACCCGATGAAGGCTTTTATACAGTCAGTTAACAAGACCTCTCTGGTACCCCCCATATCCTAACATGAACTCTGCTCTTTTGTTTCTTTGTATCGTTGTGTGCACAGTCCTGTTATAAGTCCTTTGACTCTTGAACATCATTTGTAGCAATTACCCAGCCTCAGTCTAAAGTCAGTATCTATGTGCCTCACTTGTCTTTTCCTTCATTCTTGTTTTTCTCAGTACCCCGTCCTCTTTCTTTTTATCTCTACAACTGGTTGAATTTGGGTGGGTTTTACAGCCTCACCCCCCACCATGAACCGCTCTTGTGTTTATTATCTCTGAGAATCTCCTATCAACCTCTTAATGCGCATGTGTTCTAGAATATCCTTTGTTACTGTATTTTCTTCTTTAACATTCGTCCTTGCTGTGGTAGCTTTTCACTCCTGCTCATTTCTCAGCGATTGTCCTCATCCATCCAGAGCCTGTCATGCCGTCCTACCTACCTGTGGGCACACTGGATGCTCTATGCATTTTCCCTCAGCACATGTGTAATTGCATGGAGCCATTGCTCCCGGGCCAGCAGTTCGCAGCTGCTGTCTCCAACCTTAACATCTCTCCTAGATTCAGACAACTTTTGGAGGCCTCATAGCGTTAAACATTGAGGGTGGCCTGCAATGTAACTACCCATGCACAGTTATATGCATCTTAAGAAAAAGAAGTAATGTGAGAATTCTAAGATCTCTGAGAGTATATTCCCATCTGCTCTGTTCCCTATGATGAGAGAGGATTTTGCATAAGAAATGAAGGACAAAATCATAGACCCACAAGGAGATGAAAGGCAGTGGCAGTTAGGTCCCGGGTCTCCTGAATTAACCCAGAGGAGACAACGCTAACTTGAACGTAGGAGGTAGTCATGACTCTGGATGTATTCCTTCACGATGGAGAGTCTGTCTGAAGTCTGAAAGAAGTAATCTTCACTTAACATCAGCTTATATGAAATAACACAAAACGTATAGATGTATTTTCTCTGGTGTTTAAGTAAAACTGATGGTCAGCTACAGTTTAGGTTTTAGGAAAGCCATAAACGTTTTATTTTAGAAAAGTACATATTTGAAGATATATGCTAACTACTTAAAGTTTTTATATGTGAGAACTTGCTTGTAGACAGGGTTTGGAGGCTAGCCGTTTTCAGATAACAATAAGAGATTCATCTGGCACTTATAAAATATTAGTATTGGCATTTTGAATGAACTGATGCAAGCGAAGCTGCCTATCTCCATGTCTGTTTCTGTGCCATTTTCACCTGAACCTCATCATTGTGAGGATATGGATACAAATTCCTGCTGGAGCTGTTCCAGGGTATCTTACATCCCTGGGGAAATTCCAACATTGGGAAGGATTCTGCTGATGTTACATTGCTGATGTGGAATTAGGGCACAGTTTGGCTGATTTTAAAGCAAAGAAATATGTTACCAATTATGACCTCTAAACGTTAGCTCTATTCTCCAGAAAAACGTCCACATGCAGAAATCTGGAAAACAACACAAGACATGATTAATCACCTTGCAGAGTTCAATAAGAGAGCAGTTATGCAGGTCAAGTGTACACAATCGGAGGTAACAGGAAATATTTCAAGTGACTTCACCTTTTGAGCTCAATGAAAACCTCCTCCCCTTCTGGTCAGATTGGACCACAGATATCAAGGGAATTCCTAGCATATAAAAGAGTTTGATTTGTTTGGTGTGTCATAAAACTCTTGCCTGTAAAGGACAAGAGTAATCTACAATTCCATACTTTTTTGCAAGATATTTGCAAACAACTTTCATTATCACACAATGTCCTCTTAGCCTGGAACCCAAGAAGACACAAGTTGTGAGGTATTTAGAAACTTTCTCAGACGAGACACCCAATCATTTCCACTAACCCTGTTGATGTTCATTTAGGCAGAGAAGGTTCTGGAAATATATGTCTAGGGAACAGCCATTGTGATGACAGTATCAACAAATGCTTTTTGTACACCAAAGCCAACATACTTAAAAATAATTACTGAACAAGGCTCAAATACAAGAAAAGGCTGTACAGGGATTTTTTTCACATAAGGGAATGAGTTACCAAGTGACTTCATCACGCAAGCCACTAAGCTGAGGAAGGGCCTTCATCCCTGTACTCTTGGATACTGAGGGTGAGAAACCTGCTCAAATCACTCAGGGGTTACAGACTACATTCTTACATTCTAGAAAAAGTTTCTTAGACGTAGAGACCACTAATTTCAGTTGTCCTATAAATAAAGTAAACTGACTGTTTTAGAAATAGATTCTAATACAGAAATTCCAAGTGTATCTCACTAGTTGAGAGAACAGTCTCAAAACTGAGTAAGAGAAACAGTCAGGACAGAGAAACCGTGAACAAGGATGTGTCTCAGCTACATTTAGCCTTAACCCCATTCATGTAGAATTCTGAAATGTAATTTGTACCACAGGAATGTCCCCTCTTTGAGCACAAGCAAGTGGCTTATATCTCACTAGTGCTAGGCAGTGACTGTTTAGTGGCTGTTGGATGACAAAGGTGGTTTGCAAAAAGAAGCCAGCTGTGGTTGGGTAGTAGCTGGAAGTGGATGCATGGATCCACATCAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATAGTTGGACCTGGAGGGCATTATCCTGAGTGATCACAAAAGAACTCAGATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGTTACAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCTCTTCTTAGAATTGGGAGCAAAACACCCATGGAAGGAGTTACAGAGACAAAATTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATCAACCTCCAAATGCTGACACCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTACGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCTCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTTAAGGGATCTGTAACCCTATAGGTGGAACAACATTATGAACCAACCAGTACCCTGGAGCTCTTGATTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAATGGGAGTGGGTGGGTAGGAGAGTGGGGGGGGGGTATGGGGGGCTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAAATATATATATATAAAGAAGCCAGCTGTGGTTGGGTAGGAGCTAGAAGTGGGTGCACGGATCTACCCATGACACTAGCAAGAGGATCTGCTGTGTATTAGATACAGAAAGTAGCAGGAAGTTGCCAGGAAGATGCTCAGTCTTGACAATAGGACAGCACACATGGAACTAACCTGTGTGCTTCAGATCATGGGACACAAGTCTGGAGATCTATCACGTGGCTTCCCAGGCACGAAGGCACCACAGCCACCCTGTTAGGGGTGTTCCAACTGCTGACCTGTAGTCAACAAGAACATAAGCTGTGGTGTATTAGGCTTGCCACGGAGAAGTCTGGGACTATGCACACTTTGAGAGTATCGTTTCTCCAGGCACCAGGATGTACTTATTGAGATAAGACAACCTACTTGTGAAGTACTGGGTTAGTTGCCTTCCAATAACTTTTGGAGCATTGATAGTGCTATGAGGTTGGTGAGCATGGTTCCAAGCTAACACAAGTAAGTACTTTCTGAACAATAAAGGTGTTTCCGAAGTCTCCCATTTTGAGATTCAGGATGTTAATATATCTCAGTTGACCCACAGGAAGGCTGGCAGGAAAGAAGGACTTTATGGTTCGTTTTTGTTGAACAATAGATGATTGTTAAGGTGGAGGGGCAAACTGTGTAACACACCGCCTCCCTCTCACTGAGTTCTTCATAATCTCTGGCCTCTTTATCCCCAGTTACTTGAGTGAGGCCTCGTCAGGTTACACCCTGCAGCGGTTATCTCGGATTGTTTCATAGGTGGTTCTGGTGCAGTCCATTTGGAGCCTGTTAAGTATGAAAAGCTGCTTTCGATGATGTCAATAGTCTCTAAAGAAACAATAAAAAAACCCTTCCTGTTTTCTTTTCAG
Seq C2 exon
TACCATAATGTCACCTTTGACTGGGCCTATTTGTCAAAGAAGGAGTGTGTGAAGTATGGAGGGAAGCTCGTGGGAAACAACTGTGACTTCGTGCCTGATATCACACTCATGTCCTTCATTCTCTTCCTGGGCACTTACACCTCGTCTATGGCTATGAAGAAATTCAAAACCAGTCGCTATTTTCCAACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-Slc4a4:NM_018760:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.4=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: