MmuINT0147258 @ mm10
Intron Retention
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100799647-100800641:+
Coord C1 exon
chr15:100799647-100799752
Coord A exon
chr15:100799753-100800479
Coord C2 exon
chr15:100800480-100800641
Length
727 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
CAGAGTGCTTTTTGCTCCAGGAA
3' ss Score
6.67
Exon sequences
Seq C1 exon
CTGCAGGTGTGTGCTCCCGGAGAATCCAAACAACCACACCTTACAGTATTGGAAGGACCACAACATCCTGGCTGCCGAAGTGAACTGGGCAAACCTGACAGTCAGC
Seq A exon
GTAAGTCTGGGCGTGGCCGGAGGCCCTCCGATGACCGATGACCGCCCCGTCTAAGGAGGACTTAGGTAGAGGCGGGGCAGCACTCTGCCGGACCCTGGCACTTAAGCTTAAGCGGACGTAGTGGCTCACCTGTAATCCTAGCACTTAGGAGACCAAGGTTAGAAACCTTTAAGTTTGAGGCCATCCAGGGCTATACGGTGAGGCCTGTCTGGGGTCTAAAATGGGCTACTTTGATCAAATAACCAGTAACAATGTGTGGGCTTGTTACTGGTTAACTCTGCTAAATCATCTTGATATACTTATAGATTTCCTTGCTGTTTTCACGCTAAAATTGCTACATTTTATTTATTGATCTCTGTAGCATCCTTGGTGGGAGCAGTTAGCTGATGCACATTTCTGTCAGATATTCAAATATTCAAAGCATGAATATTTAAGTTCTAAGGTTCTCTCTAATAAAAATGACAGCAACTTCTAAGTTCTTTCCAGAGCCTAGGGAGGAATGTTTGTTCCAGAGAGTTCTAACTTTGTGTCCAAGTGTCTTGGTTAGGACCACACAGTCTTCTTGACAAGGACCTGCTAGCGAGGGCCGCAGCCTGTGTGGTGGTCAAGTGGATAATGTGGGCCTGTGCTCCCCAGCAGGGGATGGCAGTGCGGGGTGAACTCAGAAGGCAGCAGCCGGTTGTTATGTGTGCCCGACTCTTGTCACCCAGAGTGCTTTTTGCTCCAG
Seq C2 exon
GAATGCCAGGAGATGCACGGGGAGTTCATGGGATCTGCCTGCGGTCACCACGGACCCTACACGCCCGACGTGCTCTTTTGGTCCTGCATTCTGTTCTTCGCCACCTTCATCGTCTCCAGCACCTTAAAGACATTTAAGACAAGCCGCTACTTCCCGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032:ENSMUST00000023776:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGCTCCCGGAGAATC
R:
CCTGGTCGGGAAGTAGCGG
Band lengths:
262-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types