MmuINT0148306 @ mm10
Intron Retention
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48219917-48224803:+
Coord C1 exon
chr5:48219917-48220080
Coord A exon
chr5:48220081-48224652
Coord C2 exon
chr5:48224653-48224803
Length
4572 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTGGCTTGAATCCTCAATAGGTA
3' ss Score
5.31
Exon sequences
Seq C1 exon
GCATTTGGCCCAGAATCCTTTCATTTGTGACTGCCATCTCAAGTGGCTAGCGGATTATCTCCACACCAACCCAATTGAGACCAGCGGTGCCCGTTGCACCAGCCCCCGCCGCCTGGCAAACAAAAGAATTGGACAGATCAAAAGCAAGAAATTCCGTTGTTCAG
Seq A exon
GTAATTTCTCACTTCATGAGACATTTCCCTTAGGAGTCAAAGCTACAGTTACATGAAAATTAGCAAGAGCAGCTGCGTTCAGCTGATTACCAAACATTGTACAGTCTCAGGTTTTTCCTTCTCTCTGGGAAAGGGAAAAGCAGAAGAAATAGAGACACAATGCAAATAGCATATCTACTAAAATGATTATCAATCAAATGAAAGGGATCCCTGGATCCTTCATATGATGTTTATAGGATTCAGATGTAACCAGGATTTGTTTTTGATAACATAAACCACTGCTCAAGTGGTATTACTCCTGTTTGTTGTACTGTGTTCTATTGACCAATGCTAAATAGTTGGACTTGCTTTTACTTATTCACAAACTGAAATAAGATTGATTGCATGTGTTTTTTTCAACCTGAGATGTTCAGAGTAGGAGGCCCAAGGTGCCTCATCTCTTTCTAAAATATTCCATAAAGACACATTTTTACGACTCTCCGTTCTCATCCAGGGAAGAGTGTGTTTATCCAAACAAAGCATCTGACGGCCGTTAACTGGGAAGTGTACGCTGCCGTACATATTGGCCTAGTGTCATATGTGTTGTGTCAGGAGGAAACATTGACTATCATTTGGGGAGTGTGCTACCTAACTCTTTTGGGCACACTTCTCATTGTGCAATCAATACATGCTAAATGTCTAGTATAAAAGTGTAATTGTTATTGTCCATGTTTATAATGAGTTTATCACTCACTGTATGTTGTTTATTTCTCTGAATATACATTGTCACTAAATTACCTGTAGTAACTTTAGTCCACTCTTAATCTAAGATAACTCATATCTCTGCTTGCTGACATTCAGGTACATCTTCTATTTCTCTCTCTCTTTGTTTTTTTTTTTTATTTAGCTAAAGAACAGTATTTCATTCCAGGTAGGTTTTGCTCGGTGGTAGGACTAACTGCAGACACCTTTTCCTCGACTTATATAGCTTCTAAACATTGATGTGCATGCTTTTGGAAGTACAGTGAACACTTCATAGATAGTGACTCACGCATAGATCACTTATAGCTGTATCCTGAAAGCCCCACCTCTGCATGCAGCTTCTGATGCTGAACCTCTCTATTTTAAAAACAAAAACAAAAACAAAAAAAAAACAGAAACCACCTTCTTTCCTCTCCCTTTCTCCTTTGCACATTTTCAGCCATTTCTCATGTTAGCGAAAATGTTTGAACCTATGGCTTTCTACTTAAATCATATTTTTTTCTCTCTTCATTGAATATCTAATCCTTGAGGCTGTTTTTAAAATATAGCTTACGAGGCTAATTTTAAAGACAGCAACCCCTCTATTGTCAAAGAGCTAGTTCTATATAAAATCAGGTATAAACATGCAAAAATGCATTTTTAACAACAACAACAACAAAACCCCGCATCTTTAAAGCTTCTTGTTTTAAAAAGAATACTTTCATTTACTATTGTTTTTGTTTTTTGTTTTTTCCTTAACAAAAGACAGCTGTTTCATATTGATTTAGCTGCACTTGTGGGGGGGTTTTATTATTAATTTATTCCCAATTGTATGTTTTTGCCTGTCTGGAGTCAGATTATTATGCTACAAACAGGATATTTAGTGTATCTTGAAGTCATTAGCAACTGCACCAATGGGCACCAATGGACACCAATGGGCACCAATGGGCACCAATGCCTTGAGTAGTCTAAGCAGAAGGAGTTGCTGTTTCTAAAGATGCAATTGTAATGTTTCCTTCCTTTCCATTCAACGCCTTCAAACTGATGAGTCTAGAGCTAGCTCTTTAAAGTATGTCCCTTACCTACTTGGTTCTTGTGTAAATGCCTCTTGACTTGTTTGCTTTAATACACTATACTTTGTATACTTTAGTATACAAAGTGTATAATTTAATATACTATAATTGTATACTTTAGTGAAAAGACTCCATTTGCTTTAATATACTATAATTGTATACTTTAGAATTTAATACTATACAAATATACATGCTATATATATGTGTGTATAGTATTGGTTGGTCCTAATTTATGTGATTTATACATATATACATATGATATTAACTGGTCTCAATTTTACGGATGTATTTATTACTTATTCTTGCCATTTAATTAATTATATATAATAGATTTAAGTATATTGCTCATTTTGAATTTTAATGCTCAAATAATAATCTACATATTATGTCTGTACGGTATAAGCAGTAATGTGTTGAAAAGAGCAATTAATTGGTCTTTTAGCTTTGTTATTTTTAGCCAATTATGTGCAAAGTTACCTACTAATCATGGCTTAGCTGAAAAAAAAAGAAACCCTCTGAAAACCAGACTATGCCTAGACTAGCATACAAATATGATTTAAATTCCTAAATTGTGGCAATTCATCTAGTCACTGCCAAATTATTCAGTTCAGTTTCTTAATAATTTAAATACCACAATCCCAGTAAAACTCAGTGCAATACAAATGCTGTGCTAGTTAAGTTTTCTGCTCTTGCTGGAAGGTAGAAGCCCAGACAGACTTTAAAAAATAACTTCTACATCAAAGATAATGTCTTAAATTTCGATTGTTGATAATTCAGTTCACATTTTAGATTTACTTGTAAGCTCTGTGGCACATTGATTGCTTGTTGCTCACTTTGTTCTCATCCACATCAGATACTAATTACAGTTTGTGTCTACCTAACACATGGTGTTAAAGTAAGCATTGCTGATTGCTGTGATAGTAATTATACATTTTTAAATGCATTCGGTGAACCCATTATCAATTATCAGAATAATGTTAGCTTTCTTGCGGCCCAATCTCCGAAGACTGAAAAGAAACACATTCTTCAATTAGTAGGGTGACTCTCATTGATGTATTGGAATGTAACCTTTTATATTTCTTATATTTGGCATTTCAATTTTTTGTTGAAATTATTGTTATGTTCCCATCAAGTGATATGCTTTAAAAGTTGGGAGTCATTTAGTAGCCTATGGCATACCCCTAATTATTATCTATCTACTGTCCTTGTAACTTTCCATTATTAGCTTTTCAGTCATTTTATATGTGTATGCACCTATTGCTATTCTGCATGGCACAATAGAAAACCTGTTTCACAGACAGTAAATTCATTAAAGGAAGCCATAGCCTTTTATTTGTATTGCACATCTTTTAGGTCATTTCATTGCCTATAAGCCATTATACTTCAAAAGTGAAATGATATTGCAATGAATGACAAATGCATCACACAATGCTACCTAATGTCTGTCATGGTAAAGAAACAAGGAAGAGAACATAATTTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGTTTGTATATGTCTATAAACCTTAACTGGGATGATTCTGTCTTTCTTTCCTCTTTGGTGATCTTTTCTTTTGCAGGGATTCACCAATTGGCCTGTAAGTAAAAGTGTCTCCTCTGAAATGTAACCTACCCTCTTTTCAATCCCTGATGTACCTTCTTCTAGTCTTGATGTTTTGCACCTATTTTCCATGAAGACACCACAGATCTCTTGAGCTTCTCTGTTGTCCTTGTAGCTTACCTTCAACTTCTTCCTGGATGTTCTTCCCGAAAGCTGTGTTTCCCACGCTGCAGTTGTGAGGAACACGGGAGGCGCCTTTCCATCTAGCCCCTTCTTTGTGTTTCCAGGCACCTTCGGTAGTTATGCTCTCGCTATGATCATACACAATCTGCGGGAAGAATGCATGTCATGTAACATTAGGATGCTTCCAGAGCGTCCGTAGCTTCTCTCCTCCCTTCGTCTTTCCTCTCGGTCTTCCCTCTGGCCTAGTGGTTGGTGTAGTGATAATGGAGCGAGATTTTCTGTTGTGCTTGATCTAACCATGTGCTTGCGAGGTATGAGAAAAACATGGTTCCGTCAAGCACCATGGAACGTCACGCAGCTTTCTACAGCATGGCAAGCTGCTGAGGCTCGAGGCAGGTCTTACTTGTCTTTGTTTTTTTTTTTTTTAATAGACTCAAAATGAACATAAAAGAGGGCTTTGGGGGCATTTCTGAAGATTATGTGAGAGGGGAGAATAACAAATGTCCGTAGGAAAAAAAAATTAAAACCTAAGTATATCGATTATCCTTGAAAAGCCCTACTTTACAATAATATACAGGAGTATGTTTATTATGAGATATGTTTTCAATTTTTGACTCATAAAAATTTTGACTCATAAAATTAAACTTTTTTTAACAATTCATATCCATTGTGTGATTATATGTGAAATAAGACTACTAGCATGGCTCAGAATCGGATCAGCAGAAAGTACAGCTGTGAAAAGCTCACTGTTATGAATGTTTTCCTGTCATGTGCATCTGGTCACTTTTTTTTCCAGAAAATTCCAAGCCTTTCGTTTAACCTTCACCTGATATCCATTGACCAAAACTCCCTAAGTTGTCTCCCTGCTGCATAATCTATAGCTCTCCTACTATTTTTCTTCCCATTATATTAATGACTTTTCTAACATTCAGACTCAGTATCTTATGTTTGGCTTGAATCCTCAATAG
Seq C2 exon
GTACAGAAGATTATCGATCAAAATTAAGTGGAGACTGCTTTGCAGACTTGGCTTGTCCTGAGAAGTGTCGCTGTGAAGGGACCACAGTAGACTGCTCCAATCAAAGACTCAACAAAATCCCTGACCATATTCCCCAGTACACAGCAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558:ENSMUST00000173107:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5)
A:
NA
C2:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types