MmuINT0150752 @ mm9
Intron Retention
Gene
ENSMUSG00000027109 | Sp3
Description
trans-acting transcription factor 3 [Source:MGI Symbol;Acc:MGI:1277166]
Coordinates
chr2:72817544-72818503:-
Coord C1 exon
chr2:72818307-72818503
Coord A exon
chr2:72817690-72818306
Coord C2 exon
chr2:72817544-72817689
Length
617 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
CCCCCGCGCTGTGCCTGCAGCTC
3' ss Score
10.04
Exon sequences
Seq C1 exon
CCCTTTTGGGCTGGAGGCTCCACCTTTTGTGTTTCCCGCACAGTCAATCAAAATAGGAAAAAAAAAATTCCCCGGACCGCTCCGGCCGTGTCCGCCGCCGCTTCCCGCATCCTCTCCCGCCGCCGCCGCCTTCGCTTCTCACCATGTGTAAGGCGGCGGGGAGCCCCGCCTGAGCTGTCCTAAACACACTATGACCG
Seq A exon
GTACGTAAAGCCGAGAGAGAGCAACCCTCGCTGCCTCCGCCGCTGCCACTGCCGCCCACAGCCAGCCCGGGGCCGCCACCGCCGGCTCCCGGCCTCCGGGAGCGTGCGACCGAGTGTCGGCGGAGGCAGAAAGCCGCACTCCCATCTCCGCCAGCCAGCTGTCCAGCCCTTCCAGCCCCAGCGCCGAGTGCCCGCCGGGCTCCGGGCGGGCGGCCCGGTCCGCCGGGAGCGCATCCCCCCTGTGTGCGGGCGCGGGCGGCGGCGGCGGGCGGGCGTGTGCGAGTGACTGACGGTGCGAGAGGAGCGAGCGCCGCGGAGGGAAAGGGGAGGAGAGGAGAGGAGAGGAGAGGGGGCAGGGGCAGCGCGGGGAGGAGGAGGAGGGAACGAGGAGGAGGAGGGTTACAGCCGCGGCGGGCGGGGGCAGCAGGAGGGGAGGAGGGAGCGCGCCGCCGCCGCCGTGGCCGCCGCGGCCGGGGGGAGGGCAGGGGAGGGGCAGGGCCCGGGCCGCCCGGCGCTCACTAATGTGGCCGCGGCTCGCGGGCCCCCTCCCTCCCCGCACCCGCCTTCCTCCCCACCCCACCCTCCTCCTCCCCCCTCCCCCCGCGCTGTGCCTGCAG
Seq C2 exon
CTCCCGAAAAGCCCGTGAAACAAGAGGAAATGGCTGCCTTGGACGTGGACGGCGGCGGAGGCGGCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGCGGCGGCGGCGGCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027109-Sp3:NM_001018042:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTTGGGCTGGAGGCTC
R:
GTTTCCGTGCTGCTGCTGTT
Band lengths:
318-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: