MmuINT0152608 @ mm9
Intron Retention
Gene
ENSMUSG00000063919 | Srrm4
Description
serine/arginine repetitive matrix 4 [Source:MGI Symbol;Acc:MGI:1916205]
Coordinates
chr5:116897263-116899636:-
Coord C1 exon
chr5:116899433-116899636
Coord A exon
chr5:116897374-116899432
Coord C2 exon
chr5:116897263-116897373
Length
2059 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GGCTCTTCTGTCTTCCTCAGGTC
3' ss Score
11.8
Exon sequences
Seq C1 exon
AGGGTTTCAGTCCCCATGTCTCCAGTGTGCAGAGGTGAAGAAGTCTAGTTTGGTCCCATCCACAGCCCGGAGCTCCCCCATCAAAGAGTGCTCCCGTAGCTCCTCCTACACCAGCACTCGATCCTCCAGTCCCTCATCCAGGTCCCCAAACCCCAGAGCTTCCCCCAGGTACACCCGGAGTCGGTCCACCTCCTCTGAAAAAAG
Seq A exon
GTGAGTGTGTCATTGACATTTGATCCACTGTTTGTCCTTCTTTGACAGGGAGTTTTGGTAACTTTCGATGCCCAACACCCCCCCCCCCCACACACACACACACACTCCCCTTCCCACAGAGAAGAGGAGTAGGACTTGACTTTGAATACCTGCTACAGCCATTACTTTTGACAGCCTTGGTTAAGACAGCCAACATCTCTAAGATTCCGCTTCCTTGTGTGGCAAATAAAAATCGGAATGCTTGGCTCAGGGACCCTGTGGCGCCTCTCAGGGGTAGAAGCACTTAGAACACAAGGAACTTTCATTGTTATTGTTTCCATTGGCATGAGGAGGAGCTAAGCACCAATTAACTCGTGCTGCTGCTTAAAAAAAGTAACCAACACCATCCTTCAAATAAAAATGTGTTTACTTAGTTGCTGTAACTCTGTGGATTAGCGATTTGTGCTGGGCTCAGATTTGTGCTGGGCTCAGCGGGCTGGCTACGTTGTCAGCCCCCTCGTGTGTTTTTGACCAGATGGCGGGTTGGCTAGGGGCTGGGAATTGAAAGTCATCCAGTGATAGTGATTAGTTGTCTTTGCACTCTGTTGTCTCTCATCAACCGGCAGGACTATCTGCTTGTACGCATGGTAGTGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGGGAGGGAACTTCTCAGCTTGAAATAACATTCCATTCTGTCTTGCTATTCTATTAAGCATAATAAGTCATAAGACCCACCCAGAAGATTCTCCTTTAGTGGAAGGAGTTGCAGAGTTACATTTCAGGGGAAGGGGGTGGGGGTGGAGAAAGAGAGAGAGGTGGGGGAGGGACTGCAGCTGTTTTTGTATTCTCACCCCCAATTTCAAGTCACTGGTATTGTTTGGTTACCTTATCTGGAATAACTGTCGTGGAACATACAGACACAAGATCTCAGTAACTGAAACATCCCATAGAATACAACCCCCCATACCCCCTTGATCCCAGCTTCCCTCTTCAAACAGAAACTCCCAAACAGCAAGCTGGCTGTTCCTCTTCTCCGACAGCTATATAATCAAAACGCAGTTTTCTTCTTTGGTTATTTCCAAACCAGCACTTGCATTTTTTTTTCCTCTCTAAGATTTCTCAATGCGCGTGCGAAGAGCAAACCGGCGGGACACTTTTCGGTGGGGAGGGGTCACAACTGTACTCAGTAGGAAAGAGTCATCCCTTCCTCCACAGTGTTCCCTGAGAGTGGGACCATCAGCTGTGAGAGAGGTAGAGCACAGGTAGAGCGAGTTCTGCTCTCCTTCAGTTACCCAGAAACCTCTGCTCTTACCACAGTTTCAGCACACCCTGCGTCCAATCATTTTCTTTCTTATTGAATGGGGGAGGGACGAGCAAATGCCTATCCTCTCTTCTTAGGGCAAGCATTGTCCCTGCAGCTCTCTGACATGTGAGAGTGACTAGCATCACTGCTTATTCTTGTGAACCATTAGGAGTGATGGCTGGCACACAAACAATTCAATGATGGTAGATCTGATCACAAGAAGGCTACTTGGTAACGGGCAAGTAGTCCATACAGCATGTATACTCTGCACAAAGAAACAATCTATTTCCTAGACAGGGTGAAATGGAACACTATGCTAAGCTAACCATGCTCCTCCAAATGGTCTGAAATGTAAAACTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTCTGTGGCTTCATGAATGGTTTGGGATATCACACAGATAAGAAAAAAAAAAAACTGGCCAGGACAATAAGCATTCACTAAATAACAGGGTGTTGTCCATATTATTATTATCAATTACTCAAAAAAGGAGGAGATTTCATTCTCTGATTAAGGGACAGGTTCCTTTAAAGAGTGCCACCTAGTGCGCTCTAGGTGCACAGAGCCTTAGCCGATGGCATAACCCTCACACACAGGTCTGCAGGCTGCAGGCTCCTTAGGGGGCTCTTCTGTCTTCCTCAG
Seq C2 exon
GTCCTACTCTCGCTCTCCCAGCTATTCGTCCAAGTCTGGCAAGAGGAGCCCACCTAGCAGAAGCTCCAGGTCTCGTCGAAGTCCCAGCTACTCTCGCTACAGCCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063919-Srrm4:NM_026886:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.854 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF152301=SRRM_C=PU(10.9=18.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: