MmuINT0152610 @ mm10
Intron Retention
Gene
ENSMUSG00000063919 | Srrm4
Description
serine/arginine repetitive matrix 4 [Source:MGI Symbol;Acc:MGI:1916205]
Coordinates
chr5:116439276-116446624:-
Coord C1 exon
chr5:116446490-116446624
Coord A exon
chr5:116444875-116446489
Coord C2 exon
chr5:116439276-116444874
Length
1615 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTTTCTCTGGTCTCTACAGTGC
3' ss Score
9.34
Exon sequences
Seq C1 exon
GGAACGGGACCTAAAGTATGGTGAGAAAGAACCACAGCCCCGAGAACGTGCGCGCAGGAGGCGACGGTCCTACTCACCCATGAGGAAGCGCAGGAGAGACTCCCCAAGCCACCTGGAGGCTCGGAGGATAACCAG
Seq A exon
GTGAGAGACCCAAGAGCAGGGCATTGCCTGCTTCCAACCTTCTCCCCATATGGACAATGGCGCTGACTAAATCATCTTTTGCTTCCCTGAAACTGGGGAATGGGGGGGGAGGGGTGGCGCTCCAGAATAGCCCTTCCAGCAGCCCCTAAAACGATGGCATTTGTTTCAAAACCTTGGAATCTTACCAAGCTTCTAATCTGCTAGGCCTGCAGTGGGGCAGGGACCTGGATAGCATGTGGAACGAGAGAGCTTGTCCTGGAGACTGCAGAGAAGACAATAGGCCAATTGGAGGACTAGTGTGTAGCCTAGGGGGTGTTTGTTCCCACAGGGCAGGGCGCTGTCCCGGTAGTACAGCCTGACCTTAGTGGAGATAGTCCTATACCCTAGAATACTCAGATGCCAGCTTAAAATTAAACTATTCGTGATCACACCCTTAACCAAGTTCAGAGAATGCAAGTGTTACCAGGATATCCAAAGGCTTAAATGGAGCTGTGGTGAGTTCCTGGGGGCACCTAGAGCCTTTTCCTCTCCTAAGGCTGTTTCTCACCCACAAAACAAGGCCTCACTCCCCAAGAGTGTCACGTGGAGGAGATGAAAGGGAACGAGAAGAGGTGACCTCGCTTTGTAAATTTAAACGCAGGACACACTGTGTCCTATCATTATTGACTCAGTGGTCAGAAGAGGTGAAAGTGTGACCTGTGACAGCTAAGGTCTCAGGGGAAGCGCTGTTTGCAGAGAGAGGGCAAAGGCTGTGAAAGAAATTGAATTTCTCAAGCTTTGAAACCTGGGAGAATGATTGGAAAGGCTGGATACCACCCCCCCCCTCTAAAAAAAAAAAACTAGGTTATCTTTCTAGCCATCTCCACTCATCCCAGAGACCAGCAGGAATCCTGGAAGCAACATTGTATCCTTCCTGAAGAGGACCAGGAGGCAGAATAAGGACAGGGGGCCCAGAGTGATGGATGGGCCTGGTCAAACAACCAACAGCGCTCTCTTCCCTGCATCTAGGCATCCATGAGTCTCTTGGCCACTGGTTACCCATGCTGCTTGGCTAACTGATCGTGGATGTAGTTCATTTTCTTAAAAATCAGTGTGTTCTTTTTCACAGCACCCCCCCCACACACACACACACCCCATGAACTTATTTTTAAAAAGAAACTATATACTACAGCATGTGGAAAAGCAGTCTCTTCTGCCTAGAAACAGAACCTACTAGGAATAGATGGTTCTAGTAAAAGTGAAAATAGCGAAACAAAACTTCAATCAAAGTGGCAACGCAGACACTGTTGCTAACTGGGAACTCTGAGCCCCAAGCCTGATTTGTTGATTTTTTTTTTAAGTGACATTATCACTTTTTCAGGATAGACTAGCACTAGAATAGTCTTTTCTTTGGTCTTGGAACTACCAGGGGGTTGGGGGATGGGGGAAGAGGTGGAGTATGTTGTTTTGTTGGGGGTTGGTTTTGTTTGTTTGTTTGTTTTTGTTTTTGTTTTGTCTGGTTTGCATTTTCTCACTAAGAGACTGGGGGATAGAAGGATATTGTTTTCCCTGAAACAGCACTGGGGCTCCCTGAGAGCAGATTGAACCTCATGCTTCCTTTCTCTGGTCTCTACAG
Seq C2 exon
TGCCCGCAAACGCCCCATCCCCTACTACCGACCCAGCCCCTCCTCGTCCAGCAGCCTCAGCAGCGCCTCCTCCTGGTACAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCCGCTCCCCTAGCCGCAGTTACTCCCGGAGCCGGAGTCCCAGTCGGAGCCACAGCAGCCGGAGCCAGACCCGGAGCAGGACGCGGACCAGCCGCAGCTCCAGTTCTCGCAGCCTCAGCCTGGGCTCCCGGAGCCGCAGTCGGAACCGGAGCCTGAGCTACAGCTCGGCAGAAAGCTATGCCAGCACGAGGCGCTAAGCGAAGGCCCTCCGTCGAGCCAGCTGCCCACCGGGAGGACCTCTCTGTACTCTGCAATCTCCTTTTACTACCTGCCCTTCAGACCATCTTCCGGGTGACAGATACGAAACGCTCCTGGGTCCTGTCCTTTATGCTTTCCTGGGAAGGTGGCATGGGATATAGGGACTTCTATTCCTTTGCCAAGCTGCTAGGAGCCTCTCTACCAGCGCCATCCTGGGGCTCACGGGGGTTGGATGGAGAAAGCCACCTGTGGAAAGCTATAATCCATGACTCAAAAGTTTGGGCCTGGCCAAGACATGTGGAGACAGCTCTGTTCCACTCACCCACTGCTCACAGTATATCTCCTAAAGGTCAGGGTTAATCCGTCCCCCCTGCCCACCTCACACCCCGCCCTTGCCCACTAATTCTGTCTTATGGCTGCACAGTTTGGAACCAGTGTTGGGAAAAAGAAGAGAGCAAAAGTGGTTGAAATTCAAGATAAGAGCTCAGAGCTTGGATCCAGACAGGAGCAGGGGCAGGTGGATGTTGGTGTCACTGACGGTGGGTTTCAGGAAAGATTGGAAATGAGCTCGCTATAGCTGCAAAGAGTCAGGTCATCTGCCCTCCTAGTATGTCAGCATGGTCAGGGAAGGGAATCCAGCAGGTTCCAACTCTGTGGCGGCCTGTACACGGGGCCCTGTGACACCCCAGGGACAATAAGGCGACAGTGGAACAGTCAGCATACCTTGGACAGCAGCCCTACTTCCCAAATTTGCCTCATCCCTGGGAGCTGGCACAAATTAGATTCCACGGGACCATCTGCTGAGCATTCTCAATGCTGTGGCCAGCAGCCAGTCCCCAGCGCCATCCAGTCTGCCCTTGCCCTCCAGTTGGCGCCTGCCATCCCCCTCCACAGTGCCCAGTCTGCCACACCCTGGATTCTACCCAGGGGCAGCCTGGCACCTGCTGCCCTACATGAAGACCACTCTCCTTGCCTCTCAGGAATTTTGCAGAGGCAGAGCACGGCATTGTAAATCAGTGTTGTGGGGGGAAAGACTCAGATACAGAGAGCCTGTGACAAAGGGACTCAAATGTTCCCTGTCTCGGGCTCCTGCTAGCTTTTGAGTTTGCTGTCAGCTTAGAGAAGCCCAATCAAATTAGGGAAATACCACACTTCAGAAGAGTATAGAAGTACCCTCCTGCCCAGGGCTGACCAGCAAGGTTACTTAGCCTTACTTAGCTGCCCTCTGATATATATAAATGCCACTAGCTGCTTTGTCTGCAGAAGATATTGGGAACAGGCAGGCAAAAGAGATGCTCCTTAAAATAAACTCATGGGCATCCCCCTCACCAGCTGCCTGGCTTTCCTGAGCCTTGTGGGTATCAAGTTTGTGATGACAACAGTTGAGCAGAGCCAGGGCACATGGAGAAAGAGCTTCTCTCCCAGCTTTGGATAGTTGCAAGGACAGACAGCGTTACTTAGCCTTTTTGCCTCAAGGAAAACATCTGGAGGTGAAGTGGGGGCGGGATTCCCTTTATTCAAGCAGTGATCTCCCCTGTGCCAAGCTTTCCCAATCTACCGTGGTGCCTGGGGGTTCAGTGAGCACCAGGGAAGTCCTTCATCCATCAGGAGGGGAGAGGGAAGTATCAGTGGCCACATCATGGCTTCTGGCCCAGATGGAAACTCCACCCACTAAAACTCCTGGATACCTATGCTGATGCCACCATGAGAGGCCGGATAGCAGGTGTCTGGCACAGGAGTAGGCGCCCTGGGAGGGCATGTGCAGCAACTGTAAATAACCCTCGTCCCCACCCAGGATGCCAACCAAGCCAATCGAGCCTCATCTTTTTCATGGAGACAAAGGCTTCCAGGAGCCACCAAACCCTCCTCTGCAGGACAGCTTATGAAGGCAGAAGAGCCTGTCCGGAAAACACAGACTATCTTCATTCAAACCACTCTAGGGGACCATTTTGCCTGGGGCTCCTAGCCAACTTTTTTATTTATTAGATTTATTTATTTTTTATTTATTTATTATTTATGTGATGAGCCCTCTCTCCTCACCGTTAGCGGTATTTAATTATTTATTTATGTATTTATTCAGAGAGATTGTGTACCTTGATATGTGGTCATTTGTGTATTTGGTGGGACCTTCTAAATTATTTGTATATCTTTTTTTTTTAATCCTGTTGCTATGGCTGCAGTGGAAGCCGAAGGCCAGAGGCATCTTGGTCTCTTTCGTGAATGCTCTAAGCCCCGAACATCCTGGGACTGACCAAGAAGTGTACTAGTCCCAAGGCTTGTTATTCAGCTTGATGCCAGTGAGGTTTGGGCCTGTGCCTCAACCCCATGTGCATGTACTGCACCGTTTTCACAGAGATATCAGAAAGATGAAGTCGGCCACAAAGAGCTCGTGATCCTCAATTCAGGGCTGGAGCCTAACATTAACATGTAAAGCTACACAAATTTAAAAGAGCTATGAAGGACTCCTTGAATGGCTGCCCAGAGTCAGAAGTGCCATGTCTTGGCCAAACAGCCAGCCTCCCATGGCCTCTGAGATAGAGCTGTTCCCTTGTGGTTGCGAGACCACGTGGGTAGGAATAGTTTAATACTAGCACGGCTCTTGGAGACAAGGTATCATTCTGATGAAACAAAGTATCATTCTGATGATGTTTGATGCTGGCACATCGGGAGAGAAAAGATAGGAATGGGCTAACCCAGGGAAGACATTGTGCTCATCTCGATGTCAGCAAAAGGGATCCACTCCTTCCTATGAGCAAACCTGGTCTGTTTCATGTATGTTACCCCTACCCGTTTCTCCTTCACTCCTAGCTTTTGAGATCAGAACGCGTTCCTGCTTTGCCCGAGATAGACAAACATTGTTCTGAGAAGAGGGCACGGGCCATCCTGGGACAAACCCACAACCCAAATCAAGCCTCCTTTTGCTGTGATCAGCAGCTGTTGCATTAGGGATGGCACAAAGCTACTTCTGAAACTAGAAAATAAAAGGCAGATGGAGGGACAGCCAGATGCCCCCCCCCAAAAAAAAGGTCACTTCTAAGTTCATGCTGGGATCTAAGACCCTGAGACCTTTCTTGGTCCTGCCTTCCTAACCAACTGGCAGGGACTTTCGGCCCGCTGGCTACAGAGAACTCTTGCCCTTTCAGAAGTCATTCTCCACTGCCTTGTGGGTGCCAGGTTGCCTGGTCCAATTGTGGATTCACCAGCACATCCCTGGCTCTTCCCACCAATGTGGTTTGTCATGCTTTAATCCAAGCCAGGGGATATTCTTCCCTGGGGAACAGTTTTCAGAAGGCTGTTTAGATACCTCTAAGGCTAGGATACACTTCTCTTCTGCTTCTCCCTCCCCTTCCTCCCCTTCCTCTTCCTCTTTCCCTCCTCCTCCATTTCTCTCCCCCTCCTCCTCAATCTTTCTCCCCTTCTCCTCCCCCTCCTCCTGCCTATTCTCCTTCCTCCTCTTCCTCCTTCTCTCCCCCTCCTCCCCTCCCTCCTCCTTCATCTCTCACCCCCCATTCCCTTTCTCCTCTATACTGCTTCTCTTTCCAAGCAAGCATAGAACTCTTTTTGGGACACTAATAACCTTGGTTAAGTAGAACCATTGCACTCAGGTGTATCTACTCACTGTACCCTCATTACTTTCTGCTTTTAGGGAATAACACCACCTGAAAGTGGGTTGCAGCTGTGTTTGTACAATGGCTAGCACTCTGTGTCGCATAGGCTCTTCAGGGTGATGGCTTAGTTCAGCCACCAACATCCAAAATGGGTAGTGTCTAGCCCGAGGTTAAGCAACACATTGCCAAAGCCCCTTGACCTCCTGCTGCAGGCATGCTCTACAAGAGTGAAATGGGGCTAATTGTTACTTTGTTGTAGGCCAGTGTTCCCACCTAGTGAGGTGGAATAGTTGACAGATAATTCCAGGCATTGGCCTGATGCCTGAGAGAGTCAACAAACACAATAGGTGTCCCAGAGACTCAGGGAGGAGAATTATCTTGAAATGCTGCAAGAAGGTTCCTATTCTTGAGACGAAACTAAAAATAGCATCTGAACTCCTACGAGAACACAAACTAACCCTGAGTTGCCAGCAAAACCCATTCACGTCCACCCAGTCCACCCACGGTGGAACCCATTCCAGGTTCTCCTTGAGACCTCCTTGGAGTGTGACTCAGCTTTTCAGGAGCAGAACAAAAGGGAGATGTTGAAAAGGAATTTGGGACTCAGTCCCAGAGAACCTCCATCCCTATGTTCCTCCCATCCAGTCTCTTTCCCAAAAGGGTTTAAAGAAATACAGATATGGGATGCTACCAAAGGTTGAAGAAGAAAGCAGTGAGTTTTGTCTTTCTCCAGGCTGACTTCCAACATTGGGGTTTTGTTGTTTGTTTTAGTTTGTTTGATTGTTTTTTGTTTTTTGTTTTGTTTTGTTTTGTGCTGCATTTTTCTTTTCCTGTGGTGCTGAGGGTGAAACCCAAGACCTCATGCACATTAGGCAGAGATTCTAGCGAGTGTCATGCCCTCAGACCTGGGCTAGAGTCCCCCTCCCCTCATCCTCTTCTGCGTACATTCTGAACAGTCTTCTCACGGGTGTCTGTGCCCCACCCTGGTTTTCTCTCTGCTGAGTAGAAAATTTTATTTAGTGATATGTGTATGACACATGCCCCCTTCCGCTGGTCAGCCCACCAGAGACACTCTGGCCAAACACAACACCATCAGACAACACTTTAAAGAATGCTATGCCTTCTCTGTTCGTTCTGTACCGATGAGCCAATGACAATGACATCATGGTCACCATCCCTCTGTCCTTAATTTTTATTTCTGTTTGTGTATTTGGGATTTTGTTGTTGTTGTTTTAGCTTTTTGTTTTGCTTCATTATTCATCTCTGTTTTGATTTTGTGGTTTTGTTCTTTTCTTTTTTTGGCGGTTGTCAGTTTTGCACTGTAAATACCATGATGTGAGCCTGACCTCAGAACATGGCTTACTTAATAATTTATTATTTCCTATTTATTGAGTGGTATTGAAAAGTGAGGGGGACCAGCCCTCCTGCTGGGTTGTTATTGAAAACCCACCCATCTCTCAGCTCTGGGTGCTGCTGTCTGTGGTGGGGGAATTATCACCCAGGTAATGAGTGCTAGACTTACCAGCCAAATTGGAATCGCAGAAACAGAGGCTTCTGTCATACAAATTAAGTCCAAAAGGATCTAAAGCACTAGGGGGAAAAAAAAAACCTCATTTAGATGGAACTTAATTGAGGAACTCAAATGCCTGTACTCGAACCAACTTCTATTAAAAAATCACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063919:ENSMUST00000076124:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.956
Domain overlap (PFAM):
C1:
PF152301=SRRM_C=PU(60.0=94.7)
A:
NA
C2:
PF152301=SRRM_C=PD(17.2=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAAAGAACCACAGCCCC
R:
CTGAGGCTGCGAGAACTGGAG
Band lengths:
343-1958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types