MmuINT0153367 @ mm9
Intron Retention
Gene
ENSMUSG00000042286 | Stab1
Description
stabilin 1 [Source:MGI Symbol;Acc:MGI:2178742]
Coordinates
chr14:31956543-31956877:-
Coord C1 exon
chr14:31956701-31956877
Coord A exon
chr14:31956630-31956700
Coord C2 exon
chr14:31956543-31956629
Length
71 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TCACATCTCCATTTATTTAGGCC
3' ss Score
7.17
Exon sequences
Seq C1 exon
GTGGCTGGCCTCCTGCCCATGCTTCAGGATGCGTCCCATCGCCCCTTCACGATGCTGTGGCCCACAGATTCTGCCCTGCAAGCCTTGCCTCCTGATAGAAAGAACTGGCTCTTCCACGAGGACCACCGTGACAAACTGGCAGCCATTTTGCGGGGTCATATGATTCGCAACATTGAG
Seq A exon
GTGGGTGCACACCCGAGCTTTGGTCCCTGTAACCTACATACCCAACTCCAGTCACATCTCCATTTATTTAG
Seq C2 exon
GCCTTGGCGTCTGACCTACCCAACCTGGGCCAACTCCGAACCATGCACGGAAACACCATCTCTTTCTCCTGCGGTCTCACCCGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042286-Stab1:NM_138672:51
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(43.9=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGATTCTGCCCTGCAAG
R:
ATGGTGTTTCCGTGCATGGTT
Band lengths:
175-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: