MmuINT0154067 @ mm9
Intron Retention
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34960938-34961606:-
Coord C1 exon
chr17:34961459-34961606
Coord A exon
chr17:34961270-34961458
Coord C2 exon
chr17:34960938-34961269
Length
189 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTTGTCTTTCTGTTACACAGTGT
3' ss Score
7.46
Exon sequences
Seq C1 exon
GGCGCCAGGCTGTACTGAGCATGGTGCGGAAGGCCAAGTACCGGGAGCTTGCCTTGTCAGAGCTCCTGGGCCGCAGGGCCCCTTTGGCAGTGCGGCTAGGTCTTGCCTACCATGTGCACGACCTCATTGGAGCCCAGCTGGTGGACTG
Seq A exon
GTGAGTCTAGTCCTGAGACTTGGGAAACGTGCAGGGACCCAGGGTTGGCGACCCTGTAAGTGTTGCTTCTGTCATCAGTGAAGCCGAGATTCTCTCATTCCCGGACTCGGGAGAAGACTGGACTAAATTCTGGATTTGCACACTTTGGGTCTAGGCAGCTGACTCCAGTCTTGTCTTTCTGTTACACAG
Seq C2 exon
TGTCCCCACCACTTCTGGAACCCTCCTTCGCCTGCCAGATACATGAGGAGCCAATGCTTGGATTCTGCAACTCACTGAGTGAGGTTCCTGGAAGTGCCACCCCAGGGTGGCTGAGCAAGTCACCGCAGTGGGTGCCAGGCTCTGCTGCTGCAAGCTGGGCTTCTACCTGAGCTGGGCTGTGGGCATTGCAGCTCTTGCTTCTGTGCGTGTGGAGTCAGGAGCCGTGCCAAGGGGATGAGAAGGTGGGGTTGCTGGAGACACTGGAGCAGGGAGTAGAAAACTCTGCCCTTCACGTCAGGCTGAAATTGCCAAATAAAATACTTGTGCCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207-Stk19:NM_019442:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(22.0=100)
A:
NA
C2:
PF104944=Stk19=PD(4.9=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGCACGACCTCATTGGA
R:
CTGACTCCACACGCACAGAAG
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: