MmuINT0154664 @ mm10
Intron Retention
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32802754-32806149:-
Coord C1 exon
chr2:32806069-32806149
Coord A exon
chr2:32802893-32806068
Coord C2 exon
chr2:32802754-32802892
Length
3176 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
GCAAGGTGTGTTTTCTACAGGAC
3' ss Score
7.18
Exon sequences
Seq C1 exon
TATTCGACTCACCTGCACCTTGCTGAAGACTGCATGAAGCATTACCAAGGCACTGTAGACAAACTCTGCCGCGTGGAGCAG
Seq A exon
GTACGATTTCTTCCTTTCCTTTTTGCATGGCAAAACTTCTGCCCGACCTATTCACCTCACTGAATCTTAACCTCTGACCTTGAACATCTTACAGAATCGTAGGATCTAGAGAAGGGAGAGCCCATGACCCCGGGTTGTCTCAGCTGTGGGGCCAGTGTGGAGCCGCTTTGGTGGGTAGGGCCAAGATAGTTCTGGAGTGCTGTGCAGTTTGGATCTTGCATGCCTGGCTCTTTCCAAAGGCTCTGTTTTTCCTGGAGTGACAGACCTGACCGTGGCAGGGTTGGCTGGTGTTTATGCTCTGATGTGTTTTGATCCCGCTATGACCAGACCAGCTTCAAAGCCCGGGCTGCAGCAGCAGGGCATGAGTCTTCCAGCTTTTCTAACCTCAGGCCTGGATGGGACTCTGCCCTCACTGGTACTTGGTGTCCCTGCTCCCAGCACTGATGTCATTGTCACCTTGTGTAGAGTACCAAAACCATAACTGTGGCAAAACTGCTAAGCTGTGTGGCAACTGTCTTGTTGTTGCTTTCAATCCCCTTGGATTGATCTCAAGAGATCAGACTCAGGGCTGCGGACGAGGCCCTCGAACACCGAGCAGGTTCTGAGGGGAGGAAGAAGATACTGAAAGATTTCAGGGTGCCAGGCTTGGTGGCTCAAGCCTAGGTATTTATAAATCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCTAAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCCAGCTGCAGATCAAATATTTACATTACAAAATTACATTAGCAAAATTACAGTTATGAAGTAGCAACAAAATGATTCTATGGTTTGGGGGCCACCACAACATGAGGAACTGTATTAAAGGGTCGCAGCGTTAGGAAGGTTGAGAACTGCTGTGCTAGTCAGTAAGAAGCAAGTTCAGATTAACTGCCTAGAAGGCTGAGCCAGGAGGACCATAGGTTTTAGGCCATCCTGGCAGCTTAGTGACAGCCCATCACACTTAGCACCACCACAGCCATGGTAGAGCCTTAGCGGGAAGTCTCATATTCCAGGAAGCATCAACTCAGGCTCAGTGTGAGCTGAGAGTCTCACCCTTGGCTTGCAGTAAGAGGCTCAGTGGAGACGTGCATGCTCTGTCCAGTAGTGTTGGCTGGGTCGGAAGGGAAGCAGCCCTCCCTCTGAAAGTACCCTGCTTCTCAGGCACCCTCCTCAACCTCACAGCTTCTCCCCAAGAGCTCAGCCTGCCAAAGCAGGAGCTGGCTAGTCCACTGTTTCTCAACCTGTGGGTCACAAGCCCTCTGGTGGCTGAACAAGCCTTTCCCAGGGGTCACATCAGACCTTTACATCACGATTCATAACAGTAGCAAAATCACAGTTATGAAGGAGCAACAAAATAGCTTTATGGTTGGGGGTCACCACAACATGAGGAACTGTGTTAAAGGGTCATGGTGTTAGGAAGGTTGCCACCCACTGTGCTCTCAGATTAATTTTGGAAGCACAGGTTGTTTTGTCTTTTGAAAGTGATTTAAAACCATAAGTGTTAAGCTGGCTGTAGTGCGGCAGACCTGTAATCCAATCCTAGCACTGAGGAGGCAGGAGCCGGTGGACTTCTGTGGACTTGAGGCCAGCCTGGTCTATATAATGCATTCTGGGACAGCCAGGGCTATTTTGTGAGACTCTGTCTCTAAAAACTACCCAAAAAATTGAATTAATTGCATTTTAGTGAGCTTAGAGAGTGTGCTCTAGGGCTGGCAAAATGGCTCAGCAGGCTTGCAGCCAAGCCTGACAACCCGAGTTTAATCCCTGGAACATGTGTGAAGGAAGAAGAGAACCAACTCCCCAAGTTGTCCTCTGACTTCCAATGTGTATCATGCATACACACTAACACAATAAATAAATGTATGTGTGTGTTTTCTTTTTTTTTCAATTCACTTTCTATCCTAATATCATTCCCTTCTACTCCCAATACCCCCTCACACAGATCCTTTCCCCATTTCCCCCTTTCTCTAAGAAGGGGGAGTCCCCCCCAGGCATCACCCTCACCCCCTGTGTATTTTTTTTTTTTTAGTGAGACTGGGTGTGATAGCTCACACTTTAATCCTAGCATTCAGAAGGGAGAGGCAGGAGGATCTCAGAGGTTGAGGCTAGCCTGGGCTATATATAGTGTGTCCCAGGCCAGCCAGAGCTACATGGTGACCCTATCTCAAAAACAAAACAAAAACAAATTGGGGGAGTGGGTGGTGCTAGTTTCTTCCTGCTGGAGCACACATCTGCTGGAGCTGTTGAGAGGACTGGGAGGGAAGTGTGCCTTCCTCAGACCATGTCAGAATGTGAGGTCACCATTTGGGTAAACTCTTGGGGTACTGATAGGAAGAGGAGTCCCAGAAACCCTTCTAGGAGTCCCAGAGAAAGCAGTGGCTGTGTCAGATCTAAAGTCAGTGCTCTGGCTTGCTGAGTGCAGTACGCTGCCCGTGGGGTATGTGACACCTGCCCTGGCTGCCCATGGGGTGAGTGGCACCCACCCTGGCTGCCCATGGGGTAACTGAGTGGCACTCTCTATGGGTGTCCGTGGAGTGGGTGGCACACACCATGGCTGTGTTCATTTTTGTCTTCTCACCTCAGTTTCCTGTCACCTTTCTGTCCTCCACCTCCCAGGCTTGGGAGTCCTTCCTTGTTTCTCCTCAGCCTGTGGAAAGCTATAGGGAGATTAAAACCAGAGGTGAAGCTCAGAAGAGTTAAACCTTAGTGTGCCTTTCATGCCAGGAGAGCCAGGGTGGAAAGAATCCAGCCATGCAGGGGCCCTTGAGATGCCCAAGTTTTCATGAATGGGAAGCGAACCCTGAGTCCCTCAGCTGGGCCGTGTATGTCACAGGTGGGGTGCCCTGGCATCCACCTACAGTCTGATCAGGTACTGTGCCTGCTTTGGAAGGACTCTCAGGGCTCTCGTGCCTGGCCATCTTAGGATTCTATGTCAGCCCGATGCTGCAGGAGACTTGTTCACAGCCTGCTCCCACAACACCACAAAGTCAGGCATTTGTAGGGCGTGAACTTCCTGAGAACTGTCACCTTCCCAGACTTGTCACAGACATAGGACCAGCAAGGTGTGTTTTCTACAG
Seq C2 exon
GACCTGGCAATGGGCACAGATGCTGAGGGGGAAAAAATCAAGGACCCCATGAGAGCCATTGTCCCCATCCTGCTGGATGCGAACGTCAGCACTTACGACAAAATCCGTATCATCCTTCTCTACATCTTCCTGAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797:ENSMUST00000050000:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(7.5=100),PF140711=YlbD_coat=FE(26.0=100)
A:
NA
C2:
PF0099518=Sec1=FE(9.6=100),PF140711=YlbD_coat=PD(1.0=2.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types