MmuINT0157416 @ mm9
Intron Retention
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24322149-24326998:-
Coord C1 exon
chr17:24326889-24326998
Coord A exon
chr17:24323233-24326888
Coord C2 exon
chr17:24322149-24323232
Length
3656 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
AATGGTTTTCAATCCTACAGGGT
3' ss Score
8.16
Exon sequences
Seq C1 exon
TTGAACTTTCTAGATGCAAGAGAAATCAGAGTGGTGTGAATATTTACCGCAAGTCACTGAAGTGGACCCCTGTGACATTGTTGGACAGTTCTACCATCCAGATCAGAAAG
Seq A exon
GTCAGCTCAATGTATGTGGGTGAATACTGGGCTTGTGTGCCCAGGACAGCAGCCTTTGTGTAAGCTTCAGAACCCAGATCGACGGGCTGTTATAGCTGATGTGCGTGATCTCTTAGTCCTTCTCACCCTTGCCTTTCTCATCCACTGCCCTTTCCTCTTCTTTTCTCCCTTCTCTCTTTTTGTCTTCTTGCCGGAAGCCAAGCATAAGGCCTTATGCATACTAGACAGGCGCTCTCCAGCTGAGCTCCGTTCCAGCACTTGCTTTTTTTTTTTTTAATCTTATGTATATGAGTGTTTTACCTTCATACCTTTCTTGTTTGTTTGTTTTGTTTTGTTTTTTGAGACAGGGCTTTTGTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTCACTTTGTAGCCCAGGCTGTCCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGACGTGCGCCACCACCGCCTGGCCCTGCATACCTTTTTTAAGATTTATTTTTATAATAATTTTCTTATTTTTTGAAATTATAATGTAGTTTCATCATTTTCTTCCTCCAAGCCTTCCCCACTTTCTCTCTCAACTTCATGATCTCATTTTCTTTAATTGTTGTCAACACACACACACACACACATACACACACACACACACACACACACACACACACTTAAATATGTAGATATGACCTCTCTGTCCATACGGTGTCACTTGTATGAATATGATTTCAGGACTGATTACTTGGTATTGGATAACCAACTGGAGAGCTCTTTCCTGGGGACAACTATTTCTCCACCTCTCAGCCGTCCTTGGTTGCCTGTGCTTCTCTGTCTAAGACTAAGCTTGATTTTTTGTTTAGACAGGGACTAACTATAGAGCCCTACCTGGCTAAGAACTCACTGTAATAAACCAGGATGGGCCTTAAACTCACAAAGGCATGCAACACCATGCCCTGCAAGGTTTTCATCACCCCCCCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTCTAATTTGATTTTTGAGACAGGGTTCCTCTGTAAAACAGAACTGTCAGTCCTGAAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAGATCGGCCTGTCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTACCACTATGCCTGGCTGTTTTTGTTTTTGTTTTTAATGTATTTTATTTTATATGTAAGGGTATTTGGCCTGCATGTACATTTGTGTACCATGTGTTTGCCTGGTGCCCACAGAGGTCAGAAGAGGACATCAGATCCCCTGCATCTGAAGCTACAGGCTGTTGTGAGAATCCTGACATGTGGGCTTGGAACTGAACTCAGATCCTCCATAAAAACACCCCATGCGCCGGGCGTGGTGGCGCTCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAAACAAAAAGAAAAAAAAAAAAAAAACCACCCCATGCTCTTAACTGCTGGGCCTTCTCGACAAAGCCTATTTATCTGTCACTGAGGTCTCACTATGTAACTTAGTCTTGGATTTCCTGTGTAGCCCAGGCAGGGGTTGAACTCATGATCTTTGTGATTCCCCTTCTCCAGAGTTCTGGTGTTTCAAGCATGGTGTGCTATATCCTGCTCACCCACGCCATATGTGTGTCTGGATCACAGTGGCTGCCGGGTAGTGAGATGCTATCATCTCCCCTAAGACTCCTAGCTGTAGTTTAATTGGAACTAAGTGTCTGGTTTTGAAATTTCAGCACCTTCCACTTGTCCCTCAACACGGTTACTACAGAATTCCACCCCAGGCTCTGTCTTACTCTACCAGTGGCTTCCGCTGGAATTACCTGTCGGGAGCTTAGCCTTTAGGCTGCCGGTCGGATGAAGATGAAGCTGATTTAGAACTTCTTCCTCGGGACTGGGGCGTGGCCCGGTGGTACAGTGTTCCATCCAGCATAGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAAATCCGTCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCCTGCGCCACCATGCCCGGCGGGCTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGCATTTGAACTCGGGACCTTCCGAAGAGCAGTTGGCCCTCTTAACCACTGAGCCATCTCGCCAGCCCCGGATTTTTTTCTTTGTTTTTTTCTGAGGCAGGGTTTTCCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGTCTCTCCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACCTCCTGGCTCTTTTAAGTATTTTTAAAGATAATTGCATTTATATTTTTTAAAGATAGAGGTTGGGACTGGAAAGGGCTCAGAGCTTAAGAGCACTGGCTGCTTTTCCAGAGGACTTGGGTTCGATTCTCAGAACCATATGGTGGTTCACAACTGTCTGTAACTCCAGTCCCAGTAGATCTGACACCCTCCTTTGGCTTCTTTGGGTACCATGCATGCAATGGTGCACAGATACATCTGTAGGCAAAACACCCATACAGGTAAATAAAATTAATTTTAAATGTTTTTTAAAAAGATTTTTCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATAGTGACTTACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAGATTTATCATCGGGCATGGTGGTAAATGTCTTTGATCCCAGCACTCAGGAGACAAAGGCAGGCGGATCTCTATAAGTTCCAGGCTAGCCTCGTTTACAAAAAGAGTTCCAGGACAGCCCATGCTACACAAAGAGATCCTGTCTTGAAAAATTAAAAAAGAAAAAGAAAAGACTTATCTCATGATTTTTTGTATCTTGTTGTTTTATGTATGAGTTTGTCTGAATTGCTTATGTGCAGTGCACATAAAGGATGGTGGATCCCTTGGAACTGGAGTTAAGTTTTAAACTTCCTGAACAGGTTACTGGGAATTGGCCTCAGGTCCTCTGGAAGAGCAGTAAGCACTCTTAACCATCCAGCCATCTCTCTGGCCCATGATAGAGTCAGGCTTTCCGAGCATTGCTGGGAGCCTGTCCTCAGCTTCTCATTGCTTGGAACATATGACCTATCTGAGAGCAGATGAACTCTGTGAAGAGAAGTTGTTCTCCAAAGTCAGTGATGACTTCTCAGAGCCATTATTTATCTTTCTAGGCCTTTTTGGAAAAATGAAAAAAACAAAACAAAACCCAAGTCCTTTGAAATGTGTACTTTCAATGCATTCACTAAAATGGTTTTCAATCCTACAG
Seq C2 exon
GGTGTGTGGGATGACAGACTGGTTAACAGAAAACCCCCGAAGCTGGGGCTGCAGGATTTAGCTGCTTTTTGTTCCCTTCCTGGCAGCCTAGGACCTGCCTTGTGGGCACACTGGGCACCATGGACCCCCCAGGGTACAATTGCTTTGTGGATAAGGACAAGATGGATGCATCCATCCAGGACCTGGGGCCAAAGGAGCTGAACTGCACGGAGCTACAGGAGCTGAAGCAACTGGCACGGCAGGGTTACTGGGCTCAGAGCCACACCCTGCGCGGGAAAGTGTACCAGCGCCTGATCCGGGACATCCCCTGCCGCACAGTCACACCTGATGCCAGCGTGTACAGTGACATTGTGGGGAAGATTGTGGGCAAGCACAGCAGCAGTAGTCTGCCCTTGCCTGAGTTTGTAGACAACACTCAGGTGCCCACCTACTGCCTGAACACACGGGGTGAAGGGGCTGTGCGCAAGATCCTCCTGTGTATTGCCAACCAGTTCCCTGACATCTCCTTCTGCCCTGCCCTGCCTGCTGTGGTGGCCTTGCTACTGCACTACAGCATCGATGAAGCTGAGTGTTTCGAAAAAGCCTGCCGCATCTTATCCTGCAATGACCCCACCAAGAAGCTCATTGACCAGAGCTTCCTGGCCTTTGAGTCTTCCTGTATGACATTTGGGGACCTGGTGAACAAGTACTGCCAGGCAGCCCATAAACTGATGGTGGCCGTGTCAGAGGACGTCCTGCAGGTCTACTCTGACTGGCAGCGATGGCTCTTTGGGGAGCTGCCCCTCAATTACTTTGCCCGTGTTTTTGATGTCTTCCTTGTAGAAGGCTACAAAGTATTGTACCGAGTTGCTCTGGCCATCCTCAAGTTCTTCCACAAGGTGAGAGCAGGACAGCCCCTTGAGTCAGACAATGTAAAGCAAGACATCCGAATGTTTGTCAAGGACATTGCCAAGACAGTGTCCCCTGAGAAACTACTAGAGAAGGCCTTTGCCATCCGCCTATTTTCCCGAAAGGAGATCCAGCTCTTGCAAATGGCCAATGAGAAAGCACTGAGGCAGAAGGGTATAACTGTCAAACAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473-Tbc1d24:NM_001163848:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0056613=RabGAP-TBC=WD(100=64.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: