MmuINT0157423 @ mm9
Intron Retention
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24312376-24318340:-
Coord C1 exon
chr17:24318170-24318340
Coord A exon
chr17:24317622-24318169
Coord C2 exon
chr17:24312376-24317621
Length
548 bp
Sequences
Splice sites
5' ss Seq
ATGGTGACA
5' ss Score
0.78
3' ss Seq
TTGTCTTTGTGTTTCTGCAGAGC
3' ss Score
11.04
Exon sequences
Seq C1 exon
GGGGAGGAGGTGGTCAAGCACTCTACGTTGATGGGGACCTGAATCGAGGGCGCACTGGACACTGTGACACATTCAACAACCAGCCCCTCTGCTCTGAGAACTTCCTCATCGCAGCTGTGGAGGCTTGGGGCTTCCAAGACCCTGACACCGAATGACGGGCCCGCACTGATG
Seq A exon
GTGACAGCCACATTGTGGGGTGATGGGACAGAGGCCCGGCTGCCTCTTCAGGGAGCAGGGAGTGAGTGAGACGTCACCCCCAGAAAGTGGAAAGGTTTGCTGTGCAGTGGGGCTGTTAGTCTCTCACGCCAGGCCTGGCCCTGGCTTGGACTTAGGTTAGGATTCCTGAGCCCTCCTGCTTCTGAGCTCTTGAACCCTCAGCCCTGTCTAGCATCTCTGTAAGAGACACCCTCTGCCCTCACCCAGGGCCCTGGCTCTGCCAGGTGTCCTGTACCCACAATTGCCAAGGCTACATTTCCATGCCCCTGAGCCTCAGCCCCTTATAAGAAAAGGGCAAATGAATCTTCTTGCCAAATGTGGGCCCATGGTGCCCCCCTGCTGGTGCTTTGACCCTGCAGCTCCTCTGAGGTTCCCCTCAGAGGGGTACATTTGCTGCTGTAGTGTAGGGTAGGATTGGGAAGGGCAGGGTCTGTGAGTTCTGCAGCTCCCCCTAGTCTAGAGATGGAATGAGGGCTGGAGAACTGTCTTTTGTCTTTGTGTTTCTGCAG
Seq C2 exon
AGCCTGAAGCTCTTGCTGCGCCTCGCTGCGAGTCCACACCTGAAGGTGGCCTCCGGAGAGACTTTCTTTGACCACCTTGGCCAGTCAGCTCCATTTCCAGAGTTCTTCTCAGAGCTGACTAGACTCTGAGGCCTTTGCCTCTCATCCCTGTGGCCTCCTTGAAGTTCTGTAGTCTTGGTGACTCTTGTACTTGGTTCCTCTGTCACAGTGACTGAGGCCCACCAAGCATGGCATGCTTGTCCCCATCCAGCTTTTTGCCTTCTCCCCAGGCCCTGTGCTCCCCTGGACCCGTTCACACAGCATCTGATTCACCTGTGTGACCTGATCCCTCAGCTGGCACTGTGGCCGACCACGTACTGTATCTTCTGTGTGCTACCCCTGCCCCTATTAAGGCCTTCAGGTCTCTGGATGTCTGTGCTTCCTGAGCCCTGTGCCAGCCTGTGCACATAGGATGCCAGCCTGTGCACATAGGATGCCAGCCTGTGCACATAGGATGCCAGCCTGTACACATAGGATGCCAGCCTGTGCACATAGGATGCCAGCCTGTGCACATAGGATGCCAGCCTGTGCACATAGGATGCCAGCCTGTGCACATAGGATGCCAGCCTGTGCACATAGGATGCCAAGGGAGGTGCTGCTTCTGAGGACTCTCGCAAGCTCCTCTTCCCCGTGACCTCCCTCAGCTGGTCCTGAGGGTCTAGGCGCCACAGAGGAAGAGAGAAGAAGCAGTGGCCCAAATGGCTCTGCTGGGGCCATGGAAGTCGGGATCATAAGGACAGGCGCCTAGCTTCCACATGACTGTCTGGCGTGCTTGAGAGTCAGCATGTGTCAGGCCAGTGCTTGTCTCCACGCTGAGATTCACTTTCGCTGGGGAAGGTCCATCCTTCCCTGTTCCACCAATTCACACCAGCTCTCTGCACGGCCACAGTGGCAGAAGAGGCAGGGCAGAAAGGAGCCTCATGCATCTAGAACTCTGGATTCTGCACAGTGGACAAGTTCCCCCACCATGCTGGCTTCCAGGATGGGTTCGCGTGACTCTATAGAGTGAAGAGGAACCACTGTTGCTCACCTCTACAGAAGGTTATAAGCCTCAATGCCCACTTCCCCTGAGCCCACTGCCGAGGCCTAGACCTCCAACTCTGGTGTTCATTTAACACCATCTTGATTTTTGTTTCTGGCAAGATCTTACTAGTTAACCTAACTGGCCTGGAACTCCCTATGTAGCCCAGGCTAGCCTGGAAATTGCTATGTAGCCTAGGTTAGACTCAAAAATCATGATCTCCCTCAGCCTCCTCATTGCTGGGCTTCTAGGTGTTAGGCCCAGCTGAGCGCTTTGAGTTTGACTGCCTCCGTTCTGAGTCGGGCTCCTGCCAGAAGGCCCCCAGGACGTTCCCAGGCTGAGCTCTTGCCGCTCACCCATGCATTACCACTGAGACTCAGAAGCCTTCAGAAGCAATGACGTTAATTGGGAGTATGTGCGGGGCTCTGCAGGGTTCCAGACTGGTGGTGGACCTTGTGTTCTGTGTGGCCCCCACTGGCAGTCCCAGGGGTCTAGCCCAAGGAGACTGATGGATGCTGAGTCATGATCACATCACAAGCAAAGTTCTTAGCTTTTCTCCCACAACATACCCAGCTCTTTAAATTTAATGTCCTTTTTTTTTCTGACTTTTCTACCAAAAGGTGTGTATTGTTTTCTTTATATTTTTATTCTTATCACTGTTCTTATCTGATACTACTAAGTGTTCTCACTTAGTATTTATTTTATTAATGTTTTCTATTATTTATTAGCTTTTGATGTTAAAAAAAAACCAAGCCAAAATGTGATGGCATTGTATAAGAAGTTATATTTTAGCAGCATTCAAACATTTGTTTTTAAAACAAATACTTAATCCAATTTAAGCCCATTCGTTAAACTAACCAAGTTTGTTAATATATAGCATATGCCGTCGGAGCCTCAGAAGCTCAGTTTATGATTTGCTTTGGTTTAGTTTGTGACAAGAGTGTCAGTTTCATGCAGCTCAGGCTAGCCTTGAACTAACTGTGTAGCTGAAGCTGCCCTTGGATTCATCTTCCTGCTTTCATCCTCTACATATTTGCATTACAGGTGTGTGTGTGTGCCACCATGCCTGGTGATAATCAGCTCATTTTTAAAGTAATTTATGATACAACACTAGGTGTTGGCATTTTAAGAATATATATATATGTATGCATATATGTATACATATGATATGTATATATATATGTATGCATATATGTATACATATGATATATATACATATATACATATACATATATATATATATTGGTTTTTGGTTTTCAAGACAGGGTTTCTCTGTGTAGCTCTGGCTATCCTGGAACAGAATCTATAGACTAGGCTGGCCTCTGACTCACAGATGCATCTGCCTCCTGAGTGCTGGGATTAAAGGTATGTGCCACCACCGTCCATCCTAATTTCTCTATTATTAAACTAAAATTACTATTTAATTTTTCCTATTTTTTATAAGCTGTCTGCTTTTATTTTCCAGTTTTTCAGTGCAGTTTGTTTTAGAGCATTCTGGATTTCAGATCTTTAAATGTCCTTTACCCATTTTCTGAGTTCGTAGAGGTTTTCTGATCTCTTTAAATATTTTATATTTGACAATTTAGGTTTTGTGCCCCCTCCCTTTGAGATGCTGAGGATTGAACCTAAGACCTTATACATTCTAGGCAAGTTCTCTACCACTGAGCCATGCCCTCAGCCCTACATTTATATATTGAACTGATTTTCAGTTTACATCAGAATTGCTGAGATGGAATTTATAGACTCTCATCCACTTGTCTACTATAAACATCAAAAAACAATTGGCCTAGTGGCAGACTCTTAATCCCATTATTCAGAAGGTAGAGGTAGGGGGATCTCAGAGAGTTTGAGGCCATCCTGTTCTATGTAACAGGTTCCAGACCAGCCAGGGCTACATAATAAGACCTTGTCTTAAAAATATATATGTATATGTGTATATACACATACATACATACATACATACATACATACATACATACATACATACATACATGGGCTGGGGATAAAGAGAAGGCTCAGTAATTAGAGCACTGGGCCTTCCAGGGTACCCAAGTTCAGTTTTCAGTATCTATATGATGGCTTACAACTATCTATAACTCAGTTCCTAGGGATCTAAGCCCTTTCTTGGCTTCTGTAGGCACTGTGCCAATGTAGAACACAGACACAGTCAAAACACTCATAAACATAAAATAAAAATGAAGGGAAAGATAAAACAGACATTATTGTGGTGCAGTGCCCCTGACTGTACAGGAATACATGCAGTTTTACAGAGACCTGCTCTCTCATATCTTCACTAAATCTAGAAAGTTACAGATTGTACTAGTTGTTTTGTTTTTAAGTCACTATTGAGGTTGAAGTTCTGTAGCAACTACCTCAGAGAGGGCTAGCTCCTCCATAGCTCTATTCAGGTCTGTGTGACAAAGTTGTTATGTCAAGCATGAGTGCCAAACAGGCTTTACACTTCTTTCCCCACAGTATTTCCATCAGGCTGGAAAGCATATGAAGTGTAAAGGATAATTTTGGTATTAAGATTCGTATCTGGGCCTGGTGTGTGTCTATAATCCCAGCACATGGACGGTAGAGGCAGAAATGTCAAATCATCTTTAGCAACAGAACAAGTTCAAGCTAGCTATGGCTACAAGAGACCTGTCTCAATAAACAAACAAACAGACAAATAAATGGAGTCTTTTATGACTTCCCTTGTTACATCAATCTTTGATTGTGCTGTAGGTGTTAGATGCAGTGTCTCATGGCTACGTTGTTACAGACAAATGATACTTGTTTGAAGGCTTGGTCATTTATTGATCTGCATGGAAATTGTGAATACTGTATGTAGGACTAAGGAAGCAGCCAGTGGACACATGGATAGGCTAATCTGTGACATGTCAGGAACCAACCACAACAAAAGGAAGGCATCCATTGGTGTGCTGCTTGTCTGCTCTGCAGTTGCTGCCTAGCCTATTTTCCTATGTGAAGAGACCAGAGCACCTCTGCTGTGCATTATACCACCACATTGGAGATGCGCTCAGGAGCTTATATGCTGAACTCGATGGCTCATAAGAGCACTGGCTGAGTGGTGCCTTAGTTCCAGTACTCAAGAGCCAAAGGCTGGTGGGTCTCTGAGTTCAAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCTAGGGCTAAACAGAGAAACCTTGTCTCTGGGAGTAGGGTGGGGGAGCATTGTCTGCTTGTCTGGATAATCCCGGTTTGATTTCCAACACCTAAATTGTGGTTCACAACCATCTGTTACTCCAGTTCCAGGGGATCTGACACCCTGTTCTGGGCTATTTGAACACTGCATGCAAGTGGTGTACAGACGTACATGCAGGCAAAACACAATAAACATAAAATTGAAATATAGGTTTAAGCCGGGCATGGTGGCACACGCCTTTAGTCCCAGCACTCGGGAGGCAGAGGCGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAACAACAACAACAACAAACAAAGAAGAAAGATTTAAAAAAAGTTTGTAAGCTGAAGGCCTAAGGAGAAGTTCCAAAGCATAATTTTGCCTTTTAAACCTTGTAGTTATGGATTTTGACAAATGGCCACCAATTAGAGGAGTCACACTGCACTGTCATCTCAGCGCTCAGGAGACTGAGGCAGGAAGATTGCAAGCATGGGGCTGGTCTGACCTAACAGGGAGTTTTAGGCTGGCCTAGCTTACATAAAGACCTTATCTTTTAAAAAAGAAATAGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTCCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGACCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGTACAGTGTACTACACTGTATACTAAATAAATAAATCTTTAAAAAAAAAAAGAAACAGAAAACAATGTGGTCCCCAGCTGACCATCGGAGTGTCTGGATGAGTAGCCAGCATACTCGTGCTTACAAAGCAAAAGTGTGGACTTGCAGCAATATACAACTTTGTGATGTGAAAATAAGTGATTTGGTTAGTGTTAGTATGTTTCCTAAATAAAGTTAGTATCTGTTGAAGAGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473-Tbc1d24:NM_001163849:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0753411=TLD=PD(23.8=86.5)
A:
NA
C2:
PF0753411=TLD=PD(23.8=86.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCCTCATCGCAGCTGTG
R:
CTGGGGAGAAGGCAAAAAGCT
Band lengths:
342-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: