MmuINT0158273 @ mm10
Intron Retention
Gene
ENSMUSG00000001750 | Tcirg1
Description
T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 [Source:MGI Symbol;Acc:MGI:1350931]
Coordinates
chr19:3898980-3902035:-
Coord C1 exon
chr19:3901891-3902035
Coord A exon
chr19:3899120-3901890
Coord C2 exon
chr19:3898980-3899119
Length
2771 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TGTATACTGTCTGCCTGCAGCTC
3' ss Score
10.12
Exon sequences
Seq C1 exon
AGTGAGGAAGGAGTGAGTGCTGTCGCTCACCGCATCCCCTGCCAGGACATGCCTCCAACCCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGCTACAGGGAAGTTAACCCTG
Seq A exon
GTAAGATCCATTGCTCCCTCAGTGGAGGTCATCCCTCCATCCTCTGTTTGGGTGCAAACCTTGAGAGGGGTGGGTAGAAGTTAGGCCCTTGCCTTTGGGGTACAAACCTTGAGAGGGGTGGGTAGAAGTTAGGCCCTTGCCTTTGGAGTGCAAACCTTGAGAGGGGTAGGAGCTGGGTCCACCCCATCCTTTAACAGAGACATAGTCCCCAGTTCAATCTCCAGGGAGGTTATTGGGTACCCTAGTCCCAGTTGGGACTTTACACTTGTCTCAGCATTAAATCCACAGGGAACCAACTTGGAACAGTTCAGAAAACAGATGTGGGAATGGCTTAAAGTCCAGCTCACTTGTTTTGATGAGTTTCTTAGTTTCTGTAGGTCATATTTTTTCTGGTCTGCAAAATGGGAATAATAGTACAAACCTCAGAGAAGTGTTAGGATGGCTAGTAGTTGTTATAGGGCCCCAAACCAACCTATAATTGTGACTTACTTGGCCACACTGCAATGTTGTTTGTTGAGGGGTTGTTGTTGTTGTTGTTGTTGTTTTATGAAGTTGGAATGAAAAGGGTTGAGGATGTGGCTCAGTTGATAGATGAATCCACCTGCCTCATGGATTCATGAAGCCCTGAGCTCAGTCTTCAGCAGAAACTAAGCATGGTGGTTAAGTCTATAATCCTAGCACTTGAGAGATGGAGGCAAGGGGATCAAGAATTCAGGCATCTTCAGCTACGTAGAAAGTTCAAGGTTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGATCACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTTCAAGGTTCAGTGGGTAAAGTGCTTACAGTAAAGTCAGGAGGCCTTTGTGATAGGCAAGACCAGTCTGAGTCCATGTACTCTCCAGCCCCTTTTCTGTGTGTATGTGTAGTTTGTTTTGTAGTTTTGAGACTGTCTTTTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTGGGGGGTGGGGTGGGGGTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTACGCTGGCCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAATTGCTGGGATTAAAGGCGTGCACCACCACACCTGGCTGGCTGACTGGCTTGCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGGCTGTCTTTCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCGCTCTTGGTCTTTTGAGATCTCTATGTGTAGTCTTGTCAGTCCTGGAACCTAGGCTGGCCTTGAACACGGTTATCCACAGCCTCTACATCTTGAGTGCTGGGATTAAAGGTGTGTGCAGTTGCCTCTGGATTGAGACAGGGTGTTACACTGGAGCCCAGGTTGGTCTTGAGTTCATGGTAATCATCCTGCCTCGGCTTCCTGAGTTCTAGAATTACAGGTATGAACCATAATGCCAGGCTTATAGATCTTAAACATAACACTCAGGGACAGAGAAATGGTTATTGAGTAAAGGCATGTGAATAATTCTGACAGCCTGAGCTCAATTTCCAGGGCCTTCTATAGGAGTAGCACCAACGCCTACAAGTTATCCTTTGAGCTGCATACATGCATACCTTCCTCTCAGTAAATTAGCAAGTAAATGTTATTCAGACAAACAACAATAACAACAAACACCCACTGAGCAACAGAGCCAGTTAGGAGCTGGCTAGGCCAGTAGAGCCTGAAGAAGAGTGGGGAGCTCCAGAGCCCATGTAGGTTCAGCAGTGCGTGGTTGTAATTACAGTGGAGGTGAGATGTGGGCTGGAGCCAGGCAGCTCCTTTCTAGTGAGGTTCCAGGCTAACTATAAGCACTGTCTCTAAATGGAGGAGTGACCCACTGTTGTTTCTGATCTACATGCACATGCGCGCACACACAAATAAAACAAAAACAGTCGGGAGGATCATTTCAGGAGTTCAAGACCATTCTGGACCACTCTGCAGCTGCCCTATCTTTAAATAACTGACAGCTAGCTGGGCAGTGGTGGCGCACACCTTTAATCCGAGTACTTGGGAGGCAGAGGCAGGCAGATTTCTAAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTTCACAGAGAAACTGTCTAGAAAAACAAACAAAACAAACAAACAAACCTGACAGCTAGAACTGCTAAACCTATGTCCACAGCCTGGCACCTGCCAGGCCTGCCTGTGGCACTCATTTATAATAACCCTATGGGGTGGCACTGAGATCTCCATTTTACAAGTGGAGAAATAGGCTCAGGAAATTTAAATAACAAGCCTTGGGTGGCATAGATTGATAGTTGTAGGCTCTGAAATGTGCCAAGTGGTCCCTGCCTCATAAACTCGCTCTTGGCTGGTCCTGAGAGGCCTCTGTGGCAACTCAGACAGGGAAGTGATACTCAGTCTCCCATGGGGACCTCCTGACTGTATACTGTCTGCCTGCAG
Seq C2 exon
CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001750:ENSMUST00000001801:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(48.4=97.8)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(50.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types