MmuINT0160598 @ mm9
Intron Retention
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105071108-105071954:+
Coord C1 exon
chr11:105071108-105071151
Coord A exon
chr11:105071152-105071858
Coord C2 exon
chr11:105071859-105071954
Length
707 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CATTTTTCCCTGTTGGCCAGTTT
3' ss Score
5.23
Exon sequences
Seq C1 exon
GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG
Seq A exon
GTAAGTTAAATTGGGGGTTAAAAAACAACCTCCAGTATCTTTAAACAACTTAATAATACTCTTGTTTATTTAAGGCGTTAGAAAGTAGTGTTTTGCCTTTACTGTGATCTTGCCCTTCTCTTTCCATCTTCATCAAACTAATGTTGGCCATCTTGTAATTAGAAGGACTGCTGCAGGTTTGCTAGGTTTAAGTTTTGTATCATGTGTCTTGTCTGTGATGATAGAAGAATTCACATATGAAGTGCACTTTCTCTTGGCCAGATTAGGTTTTGTGTTTCTCAGTGATTAAGGTACAAGGACTTGTCTCTCCTTGTGGAATGTATGTGTAGTGAACTCAGTGACTCATTGTTAAGTGGTTACTAAAGATCACTAACAACTTCTACACTACTGTCTTTCTGCCTCATGTATTTTGAGACCAAGTGGGGGTGGGGAGATGCATTCTTCTCTCATGTCTGTCCAAAACCATGCGTACTTTCAGCTTCAACCCATGTTTTCTATGTATCTTGTTACATTTCTTTGGGAGCTCTTTCTCAAAACTCTCATTGAAAAGATAAATTTGGCTTACATGGCATTTTATCTCTAGAATGAGATGTATTGACTTAAAGGGCCATGTATAATTAAGACCTGTTTGTATGTTAATCTTTTACTCTCCTCTGAAGCATGGTACTGTTTTGAATTATTCATATCCATTTTTCCCTGTTGGCCAG
Seq C2 exon
TTTGCTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694-Tlk2:NM_001112705:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=NA C2=0.986
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: