MmuINT0162724 @ mm9
Intron Retention
Gene
ENSMUSG00000024034 | Tmprss3
Description
transmembrane protease, serine 3 [Source:MGI Symbol;Acc:MGI:2155445]
Coordinates
chr17:31325245-31326249:-
Coord C1 exon
chr17:31326084-31326249
Coord A exon
chr17:31325415-31326083
Coord C2 exon
chr17:31325245-31325414
Length
669 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TCTCTGTTTGTGCATTTCAGCCT
3' ss Score
8.19
Exon sequences
Seq C1 exon
CCTGTGGCACGAGAACGGGCTACAGTCCCCGAATTGTGGGTGGAAACATGTCCTCGCTCACTCAGTGGCCCTGGCAGGTCAGCCTCCAGTTCCAGGGGTACCACCTATGTGGGGGCTCCATCATCACCCCTCTGTGGATCGTCACTGCGGCACACTGTGTTTATGA
Seq A exon
GTGAGTGACTGGGCCTGCTGCTGTGGCTTCGGCTCTTCCCAGAGCCTTGCCTAGTCCTGGGTCAGGTAGAGATGGGATGATCTGGAGGTGAGGGCAAGTCAGCAAGCCATGTGCCTTACAGTGGATCTGTCTCTGCGTCTGAGAGTGACGTGAGCTGAGCTGGCACAGGGAAGGTAGAAAAGGGAGGAGGGAGCTCAAGGCAGAATGAGACCCATTGAAATAAGGGTCCTAGGTCCTCCCGTCGCTCACTACTCCTCATCCATGGTATGACACAGCAGGATACCCTGGGTGGAAGTGCAGGGTATCCAGAGAACACTGAGCCCCCTTGAAGCTGTGTCTGCCAGGCGTTTAGTAGTCCCAGAAACACCTTAGTGGCGGATTCTCTTTTTATCTCCTGGTTTGGTTACTGTCCAATGGAGAAGAGCCTCTCTGCAGAGAGCAAAGCTTAGCCCAGATCTCAAATGCGTATCTCTGGGGTGTCATGGAAAGAATGACCTGTCTGGGGGTATACACGAGTGTGGTCTGTGTGGGGCACAGATGTGTAGGGTATTGGGCCATCTCCCACCTGGAGATCCCACATCTCTCACCATTTCCCTGGGCTCTTGGGACACCAGAGTTCAACAGGGCTGGGTCTCTCCTGAGATTCACCTCTCTGTTTGTGCATTTCAG
Seq C2 exon
CCTGTACCACCCCAAGTCCTGGACTGTCCAGGTGGGTCTTGTGTCCCTGATGGACAGTCCTGTGCCCTCCCATCTGGTGGAGAAAATCATCTATCACAGCAAGTACAAGCCAAAGCGGCTGGGCAATGACATAGCCCTCATGAAGCTGTCCGAGCCACTCACCTTTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024034-Tmprss3:NM_080727:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.0=8.9),PF0008921=Trypsin=PU(19.4=78.6)
A:
NA
C2:
PF0008921=Trypsin=FE(25.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCACGAGAACGGG
R:
GTCAAAGGTGAGTGGCTCGG
Band lengths:
334-1003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: