MmuINT0162753 @ mm9
Intron Retention
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78276634-78277238:-
Coord C1 exon
chr15:78277093-78277238
Coord A exon
chr15:78276733-78277092
Coord C2 exon
chr15:78276634-78276732
Length
360 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TGTCCCTCTCCTGTCCCCAGCCT
3' ss Score
10.03
Exon sequences
Seq C1 exon
GCTGTGTGGCTTCCGTACCCTGCAGCCATATGCTGAGAGGATCCCCATGGTGGCCTCAGATGGTGTCACCATCAACTTCACCTCCCAGATCTCCCTCACAGGCCCGGGTGTGCAAGTGTACTACAGCTTGTACAACCAATCAGACC
Seq A exon
GTGAGTACAATTTGAGGTGTGTGTGTGTGTGTGTGTGTGTGCCCGTGCCCTGCCCCTGTGCTGTCCCCAGATGTGCACAAACATTTATGAGGCTAGGCCACAGTGAGAGTGCTATGTGTCTTCATACACATGTGTGCACATGGCACGTAGTTTTATGTGCTGGGTAGGCAGTCACATGTATCCCTTTGGGTGTGTGTTGTCTGGATGTAGCTCTGCATGGACCACAGACACCAGGCACTGGAGCAGGTGTATGGGCACCTAATTGTGTACATGTAAGGATACAGACGCACGTATTTCATGGCATGCATCCTAAGTGTGCTCTTCCGCTTCCATTTCCTACTGTCCCTCTCCTGTCCCCAG
Seq C2 exon
CCTGCCCTGGTGAGTTCCTCTGCTCTGTGAATGGACTGTGTGTCCCTGCGTGTGACGGGATCAAGGACTGCCCCAATGGCCTGGATGAGAGAAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942-Tmprss6:NM_027902:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(37.6=82.0),PF0005713=Ldl_recept_a=PU(2.9=2.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=PD(94.1=94.1),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTGGCTTCCGTACC
R:
TCTCTCATCCAGGCCATTGGG
Band lengths:
238-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: