MmuINT0162789 @ mm9
Intron Retention
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80357036-80357952:+
Coord C1 exon
chr10:80357036-80357172
Coord A exon
chr10:80357173-80357546
Coord C2 exon
chr10:80357547-80357952
Length
374 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGTTGGTATCCTCCTGCAGGGT
3' ss Score
9.7
Exon sequences
Seq C1 exon
CCACCAAGCCTGACATCTTGCAGAAGGCGTCCGTGGGCATCATAGAGCAGAAGATGTGTGGAGCCCTGTACAACTTCTCCCTCACTGACCGCATGCTCTGTGCTGGCTTCCTGGAGGGCAGAGTTGACTCCTGCCAG
Seq A exon
GTGGGTGCCATAGGGATGCCCCTGCCCCATTCCTACCTGGGCTCCATCCCCGGTACCGAAAAAGGGAAAACAAGAATGTTTGATGGCCGAGCAGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGGGAGACACAGGTAAATCTCTGAGTTTGAGGCCAGCCCGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGATACACAGAGACACCCTGTCTTAGAAAAAAAAAATGATGAAGGATCAGAGAAGGAAAGGAATCTGCCGAAGGTCACACAGCCAAGCTTGAATGTGAAATCTGATGTCTAATGGGAGTGGAACCTTTTTATTCCTTGGATGGGTGTCCCACAAAGGCCTGTTGGTATCCTCCTGCAG
Seq C2 exon
GGTGATTCTGGTGGCCCCTTGGCATGTGAAGAGACACCTGGTGTCTTTTACCTGGCTGGCATCGTGAGCTGGGGCATTGGCTGTGCCCAGGCTAAGAAGCCTGGCGTATATGCACGAATCACACGCCTCAAGGACTGGATCCTGAAAGCGATGTCCTCAGACCCCAGCTCCATGGCTCGCCCCCACACCTCCAGCACACGGCTCATCCCTAGTGAGCCCCCCAAAACCACAGCTGCTGGCCTCATTATCCCAGAGGCCACCACCAGCAGACTTGCTACCCCCAGGGCCACCATCAGAGTGACCACTAGACCACTCAACACAACACTGTCTGCCAGGAGTACCACCACCAGGGGACAGACAGCAGCCCCAAGTGCACCGGGCACCACCATACACTCTCACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-Tmprss9:NM_001081688:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.441
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=33.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAAGATGTGTGGAGCC
R:
TCTGGGATAATGAGGCCAGCA
Band lengths:
347-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: