MmuINT0162914 @ mm9
Intron Retention
Gene
ENSMUSG00000028364 | Tnc
Description
tenascin C [Source:MGI Symbol;Acc:MGI:101922]
Coordinates
chr4:63654061-63656847:-
Coord C1 exon
chr4:63656575-63656847
Coord A exon
chr4:63654334-63656574
Coord C2 exon
chr4:63654061-63654333
Length
2241 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
CCTTCCCTCTCATCTTTCAGCCA
3' ss Score
10.91
Exon sequences
Seq C1 exon
AGGATCTCCCTCAGCTGGGAGGCTTGTCTGTGACTGAGGTCAGCTGGGACGGCCTCACACTCAACTGGACCACAGATGACCTGGCCTATAAGCACTTTGTCGTTCAGGTGCAGGAGGCCAACAATGTGGAGGCCGCTCAGAACCTCACGGTACCCGGCAGCCTCAGAGCTGTGGACATCCCAGGCCTCAAGGCCGACACCCCTTATAGAGTCTCCATCTACGGGGTCATCCAGGGCTATAGAACACCGATGCTCTCTACTGACGTCTCCACAG
Seq A exon
GTATCATCTCCACTGCCCATGCTTAGGGTTCTCTCTTGCGCTCGCTCTTGCGCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTCACTCCCCCTTCTCTCTCCCCACTCCTCTCTCTCTCTCTCTGAGATGGCAAGGGAACTAGCTTTTCTTCCTGGCTAATTCCTTTCTACGCATGACGCATGCTCAGAGCCCTTTCGGTGAGCTGTTCCATCATTCCAATGCCTTCGCCACAGCAGTGACGAGCCATGTAAGATACTCACACTTCTGGCCTCCGACATCCACTTTCTTGATTCACCTAGTCAGTACCACAATGGCACCTTTGCACGGCGGCCTCTGTTTGGAGAACCAGCCTGTTTGGTTTTAACTTCCATCTGTAGTCCTGGCAGAGAATCAAAAGCCCACCCTCCCCACATGTGAGTTTGATGGAGCACAGACCATTTATTTTAGAGACTCTTTTGCTGTTTGAGCATTATTTCAAAATTTCTCGTGGAGATGTGTCCTACAGTGCTTACACTTACACAGTGATTCTTTGAAATGAAGTGAGCACAACAGGAGAACTGAATTACCCTCCAGTAGGCAAAATTCTCTCAGCTGCAGAGTCATTGCTAGAACATCAAACTATCAAGCTATCCGTCAAAGAGAGAAAACATACAATTCTGAATGGATAATATACCAAAGTTACTGTTGTTCTGTAGCAGGACACTCAGTAGCTCTCAGAGCAAGAAGTATTTCAGGCTATAAACGGAACAGAGTTGCTACCCCCTTTTTGCTCTGTGAATCAAGAGTTATTTCCCGAAGCAAGCTCCCAATTCCTACACCAGGGATGCGTTCTGGTTTACTCGTTACACTGTTACAGTTATAAAGCTTTCAATGGGACTCTTCCCAAGTGAACGGCCTTTCCTAACCCTGTTTTCTGTGGCTCGTCTTTATGGTGTGCCCTGATGAGTTCTTTCTCATGAAAATGCCTCCCTTTTTTTATACAGTCACTGTGTCTCATAGCAAACCATTACATCTTTGTTGATTCAAAAGGATAACTCTGTGATTTTGCCTCAGTTGTTACAGAAACTGTCACTGATGCATACATAAAACGTAAGCAACCCCAGGGTGGACAGTGACCTCAGGCTGACCAGAGATTACAGTTGAGGATCTGCTGACTTTTCTCCAGGGTTCTTGTCTGACATCCACAAACTATTCTGTCCCAGAAGGCAGAGCAATCAATCACCCGCCACTTCTGATCTTTCCTGCAGATCTCGTGGTTTGGATGCCATCTGTATTCTTTTTTATGGTAGCAACATTCTTGTCTCTGAGGAGTTGGCCCACGGAGGGGAAGGGCTATAATTAATCTGTGAATCTGGGATTAAGGGTCTTTCTCCTCGCTACATAGATTGTACTGGCTTCACAAATGCCTCCCATGTGCACACACTGCTTGCTATATCACCACTTCTCAGGAAAGTAAAAGCTCTGGCAGGACATCTCCCCAGAAAAATATTATTTCTTAGCTAAAAAGGGTTGTCTGAACGGTTTGGCTGAGCTGTCTTGGCTGCCAATACAGGACCAACCTTCTTGGCCTACATAGACATAAGTAAAAGAGAACATGCTATTTTAACAGATGATGAGAACAGCTGGCTCTCCCTTATCTAAAGTATGGAAAAAAATAATCAAGAGTTACCCTGAGAGGTGGGAGGATCTTTTCAAGTGACAAAATCAGAAGCCTCCAGGTCCCACTCAGGGAGGCCCATGCTGTCAGCATTATTTAGCACTCATTTAGATAGATAGGCATTCTCTCAAAGCTAATGCAGGAATCCACATAATCTTGGTCCCTGAGCCTGAAAGCTGTCAGCCCTCATATCTTTTGACTGATTGCCAATGGCCCTGAGGCAGGGCTCTCAGAGACAGATCCAGCTAAGATGAAGCCAATTCCACTGAGACTAGCCAGCCCGTCTTCTGTGCTGAGGTATCTTGCCAGGCCTGATCATCAGTGGCAAATGCAGGGGAGAAAAGTCTAACAGCTATCCCCTCCTTTGCTCAGCTTCCTCTTAACAAAACCAGTTTCTCCTTCCCTGGCACTGATTAGTAGTGGCAGCATCACTTTGCCTTGCTATAACCCTGAACTATCAGACCTTACTCCCCGGGCATGATTCTATTAACCACCTCCACCTTGAAACACAGCCAAATAACTAAATCATTTGATTTTTTCTCTCTCTCTCCTTCCCTCTCATCTTTCAG
Seq C2 exon
CCAGAGAACCTGAAATTGGAAACTTAAATGTTTCTGATGTAACTCCTAAGAGCTTCAATCTCTCCTGGACAGCTACCGACGGGATCTTCGACATGTTTACTATTGAAATTATTGATTCTAATAGGTTGCTGCAAACAGCAGAACATAATATATCTGGTGCTGAACGGACTGCCCACATCTCAGGGCTTCCACCTAGTACTGATTTCATTGTCTACCTCTCTGGAATTGCTCCCAGCATCCGTACCAAAACCATCAGTACCACGGCTACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028364-Tnc:NM_011607:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.168
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.0)
A:
NA
C2:
PF0004116=fn3=WD(100=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: