MmuINT0163685 @ mm9
Intron Retention
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34840816-34846644:+
Coord C1 exon
chr17:34840816-34841154
Coord A exon
chr17:34841155-34846323
Coord C2 exon
chr17:34846324-34846644
Length
5169 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCGTAATTGTCTATAACCAGAGG
3' ss Score
4.22
Exon sequences
Seq C1 exon
CTGCAGAGGAAGAGCCCCCGAGCCCAGAGCCCAGCACAGAGGCCCCAGAGCCCACAGAGGCCCCAGAACCCACCGAGGAGCCGCTCCTGGGAGAGCTGACAGTGACAGGATCATCCCCAGACTCCCTGATCCTCTCCTGGACCATCCCCAAGGGAGACTTTGACTCCTTCACTGTCCAGTACAAGGACAGTGATGGGCGGCCCCAGGTGATGCGTGTTGGAGGCCAGGAGAGGGAGGTCATCGTAAGAGACCTGGATCCTGGGCGCAAGTACAAGATGAACCTGTATGGGCTCCATGAGGGGCGTCGTGTGGGTCCCGTGTCGACTGTGGGTGTGACTG
Seq A exon
GTGAGTGACTGTCAGATAGCTCTGTTTGGAATGATACAATTTCTTTTATTCATATGAGTGCTTTGCCTGCACATATGTCTGTGCACCACATATGTGTGCTTGAGGAAGTGGGGAGCCTCCACATGGGTGCTGGGAATTGAACCCAGGTCCTTTGCAAGACCTACAAGTACTCTTAACTCCTGAGCCAATTCTTGGCTCCAATGATGACCCTTTTCTACCATCTTTATGGTAACACTTATTCTCACAGCAGCAAGACTGTGTGAGTGCTTCACTTTTCCTAGGGATACATATCTAGATAGGATACTGACAACTAACAAGATATGCCACACAAGTCTGACATCTGAATCAGTAGATTACTTTAAGAGTATGGGTGAAGGGTTACTTGGAGAAAATATGGGTGACCCAAATGCAGGTGTATTATATAAAAGTCAACCTCCTCATGAATAATCACTCACAAAAGAGCCATCCTTGGAGCTTTCTCCAACTCTCCTGAAAGTAATTGCTACTGTTTAGCTAGTATTGGGACAGACTCTGAGTCTTGTAAGTTTCAGGAGTTTCCTGAGACTTGTGAGTTTTCTTTACTTCTTGAGTAAGCTTTTGTTTACTTTCTGAATATTTTGCTGTGATTTGTTTTTGAGAAAAGGCCTCTCTACATAGCCATAGCTGTCCTGGAACTCACTATGTAGACAAGCTTTACTTGGAACTCAGAGATCTGACTGCCTCTGCCTCTCAAGTACTAGAATTAAAGGCACACACTACCACAGCAGACTTCCTGAATTCTAATGAGCTTTTCTCTGATAGGGAATGCTTCAGTTCTGAGGAAAAAGCTACACAATTCTGTCTTCCTTCTTCTGGCTTTCTCTCTCTCTCTCTCTCTCACACACACACACCACTTTTCTGCAGTGTTCCCTGAACCTTGGAAGGAGGGGATAGAAATGCTTCATTATTTTCTTCCATCTATTGCTGAGTATATGACAGAGCAACTGTCATTTTGTTTCAGTAATTTCACCAGTTGAGTCCCTACAGTCTACCTCTAATTGCAAGAGATGTTTCCTTCCATGATAAATTGGCATTGCTAGCCACTGTAATCCATAGATGCAGACAGATTTTAGAAGGCCATTGCATAGGCATATTATATCCATTTAATAAAACAGCAGCTGCTGCCTCCCCATCAGGGCCTATGTCTTCTCCAGCCACAGGCTTCCCCCCTGGTTTACAGTATGAGATGTAAATTCCCTCCCGAGGCACAGACCTAATTATGTTGTCCCCATAAAAGCCATGCCTCTATTGTGCTAGTTGGGCCTGCATGGGTGGCTCTGCAGAATTCAGGGGTCACAGACAAGCAAGACTGTTGGTGAGAATTTTTCCAAAAGCGCCCTTTATGGTGCCTGTCTGTAATATAAATGCAGACCAGCAAGAGGGGACCTTCCAGTCCAGTGTCCATCTGGTTTCTCCATGTTCTGCAGCAAATGTGCAGGGTCTTCGGCGATAGAGATGTACTATCTAATTTAATGTTGCAACCAACAGTCTTAGCTTTGGGGGGTTCTTAACCTCAACCTCATAGGAAGGTAGCCTGATCGATCCTCCTATTGGATTTCCACTCACCAACCTTATAGCTTCTGGACATCCCCTTTCCCGTTGATGGAGGGCATCATCCCTAGGCTCTTGAACTTATGACTTTCCTGTTCTTCAGACGGATTTCTAGATAGTCAAAATCATTCAGAGATGGGCATGATGTTATCTATGTAACCCAGTGCTTTCATAGAGGTGGACTGAATAACAACGAGGGATCCCAAGACCAAAAGCAGGACTGTAAGGACAGCCTTGGGGGAGTGCTCTGAAGATCCCCTGTTGAGCATTCCGAATGAATGCAGATTGACCTTGGGAGCCCAGCAGCAAAGGTGGTAGTGAGGAAACATTGCCAAAGCTCAACACAGTACAAAATGATCTGATCGTTTTCACTTGTCGTGACCAAGAGAGGTATGTTAAGAACATATAGATAGAATAGGTGTACCATCCTGCCTGGCCTTGCGTAGCACACAGACCTCTTCCATAAACTGTCCTCCTCATCCCAAGATACTGTTGCTTTAAGACCGGTGTGTACCTCTTTGCGCTTGATGGTCTTGGAGGACCAACTCAGGCCCATAGTTGTACTCCAACCTACCATGCCTTCAGTTGGACTGGGTCCCTAGTTCTGACAAGCTCCTGGCCAGCAGCAACATGGGCTGATGTAGTTTGTTTGTTTGTTTAATGGTTTTTTTTTTCTTTTTTTGCAGGAGGAGGTTGGTTTTTTTTGTGTGTTTTGTTTTGTTTTTAAGATTCATTCATTTATTTGATGTGAGTATACTGTAGCTGTCTCTAGACACACCAGAAGAGGGTGTCAGATTCCCATTATAGATGTTTTTGAGTCACCATGTGGTTGTTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTGTTAACTACTGAGTCATCTCTCCAGCCCCTGAGTTTAACCTACACCATTCATCATCCGTCTTCTGTGGACTGCTGCTTGGGAGTAAAACCTGTCATGAGTTCACTCACTAGTGCAGCATTTGGCTTTCTGTTCACTTTCCCCATAGGAATTGTCTGTACACTAATATCAGCACATTTTCTTTTGCGTGACCAGAACAGATCTTTGGTCTTCCTTGTCTTTCTCTCATTCCCTCTCAACTGCTTCTGTGTTTTATAAAAGTCATTTACATACTGTTCAGAGTCATTCTGAGTTCCCAGAGACTCTGACTCAGGAAGACCACATCCCATCCCCGGTCCCCACAAGCCACTGAAGCACTGTGTAGCTCTGGCTGACCTAGAGTTTGCTATATAGAACAGACTAGCCCCAAACTCACAGAGATCCACCTGCCTCTGCTCCTTGAACACTGCAATTGAAGACATCTGGCTGCAGGTCTCTTTCTTAGCTCTCCTGGGAACACACTTTTATCTGACTTGATGGGCTGGGTATCAGTGTTGCTTCTCTTACTCCTGGTTTCTTCCAGCAACACCATCTCCATTCTGTTGCCTCCAAGGCCCTGGTATTTATGGGGACTAAGTGTCCCTGTTGGCTCCTGCGAGCCATTTTCCCTGTTTTGCCTTCAGTTATGAAGCTTTTGTCTTGGGGTGGGATTGGCTGCTATAATGCTGTTTCTCCATCTCCACTCAGATTAATCCCATCTGCCTCTGTTCCCAGCCACACAAAGCAGGGCTGTTGGAAGCTTTCAGTTTAAGTCTTTCCCAAGCTGTTCATGTGCTGACTGGACTCAGTCATTACTAATGAATGCCCTGCCTGCATACTGAGCCACAGATTCTCTTCCTCTCTTCATGGTGAGACCACTCACAGAGGTCAGACCTAAAGTCTGTTGTCTTCCACCCTTCCCTGGCCCTTAATCATCTAGTTCCTGCCAGGGCATCTGAGATTTTGTATCCTACGCTAGGCTCTTTATCATGGGTCCAATCTGCACTCTCTTTGTCTTGCATCCTGCCATCTGTAAGAGACAGTCAACAATGCCTCCATCTTGTCTTCTTTTCTCTACTTCCCCTGGCCCAAGCCAGAGACTCATGAGCAGAGAGCATTGCAATTCCTCCCTTGTGTGGGCAAGTTCTTTTGCAGAAGGCAGCTGAGTTTCAGTTTCACATCTTTGCCTATGAAGAGGTCACTCAGCTGACACTGTAGCTTGCTTACCATCTTTCCTATGTGTTACTTTTCAGAACTGGAATACACCCTCTAGTCCGTTGACTGTTTTGCAGACAAGCTTATATTTATGTAGTGCAAACCATTCATCAACCATATCCAACTTAGGAAAAAGGAATCCCAAGTTTCTCACTTGGATGCTCTCCAGTTATGTTGGTTGGCTGTCCTGGGGAGACCTGAATCTACTCCCACCACATGAGGCACTGAAAATAGACCCAAGAAACAATTCAACCCAAGTCTAGCGTAGTAAACCAACGTGCCCAGAGGGGTCAAATGTAGGAATATGATGATACCAGACTGAAAATAGATAATCACTGCAAACCTAACTCCAACCGAGGTTACAGCCCCCACAAGCCCTTTCCTTTTTTCCTGGAGTTCCTGTGCAGCTTGCACCTGCCAGATAGTTACAATTGTTATGCTTCCATAACCATGCTGAGGCCTTTTAAATCCTGTAAGCTTCAGGACTTTCCTGAGAGAGACTCAGAGGGGATGTTTCAGTTGGGAGGAAACAACTACACCAACTTCTGCCAATCCCACTCAGACCCAGCAGGGCATCCAGAGTCTGCTATCCAGTCAGGATCCCAAGGAGCAGGCTGCCTAGAAAGGCCCACAGCAGAGGCAGCAGCCTTGGAATTGTCCCTGAGCATGCACTGTCCCAGGACTCCTTACAGAGACTCTGTCCTTGTCCGGTGCACCCAGCCCACGAGGGAATAGCAAAGAGCCTGGCGTTTCACTGTCACCTATAAATGCACTCCATTGACTTAATTTTGTTTTTAATTTTTGATTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCACTCTGTAGACCCAGCTGGCCTCCAACTCAGAGACCCGCTTTGCCTCTGCCTCCCAAGTGCTGGGATTAGAGGCGAGCTCCACCATATCTGGCTTACTTATTTTATTTCATTTTATTTTTGATGCAATGTTAGATTTTAATTCCAGTGCATCAATTAGTTCACTCCACAAAGAACCCTATGCCCTGATCTGGACGCTCTGGAGCCAAGTGTCAGTTGTTCCCAGCCAGAGACCTCCAACAACTAACTCATCTGGAAGGACTGTGTCTGGGAGGGGTGGGTCAGATTGCTAAGGAGCTGTTCCAGCCCAGACTGGAGCAAAGTTGTGAATCCAGTGAGGAAGGAAATGGCAAGGAGAACCAGCAGAGGGAGGCACAGAGCAGTGGCCACATGGGGTACAATCACAGGCATCAGGTGTTGGATCAAGGGAGAAATCACGTGGGCATGGGTGGACGGAGCAGGAGTGGAAAGCCCAGGTGGGAGCTAGGAATGGCAGGGTAGAAGGCACAGAAAAGAAATGTCACTGTGGCCAGTGCAGTTCTGCTCCTCGGAGCTTTGATTTTATAAACGTCCTTTGTATGGGAACTTAGGAAATAACCTGTCCCCGTAATTGTCTATAACCAG
Seq C2 exon
AGGAGGAAGCTACGACCACACAGGCAGAGCCCATCGTGACCACTGAGCCTCCTCCTAAGAAGCCGCACCTGGGAGTGCTGACTGTGACCGATGCCACCCCTGACTCCCTGAGCCTCTCCTGGACGGTCCCGGAGGCACACTTTGACCAATTCGTGATCCAGTACAAGAACGGGGATGGGCAGCCCAAGGTGGTGCGGGTGCCAGGGCATGAGGACCAGGTCACCATCTCTGGCCTGGAGCCAGACCACAAGTACAAAATGAACCTGTATGGCATCTACAGTGGCCAGCGTGTGGGCCCTGTGTCTGCTGTTGGGGTGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327-Tnxb:NM_031176:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.718 A=NA C2=0.639
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=71.7)
A:
NA
C2:
PF0004116=fn3=WD(100=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: