MmuINT0164371 @ mm9
Intron Retention
Gene
ENSMUSG00000033825 | Tpsb2
Description
tryptase beta 2 [Source:MGI Symbol;Acc:MGI:96942]
Coordinates
chr17:25503705-25504256:+
Coord C1 exon
chr17:25503705-25503870
Coord A exon
chr17:25503871-25503990
Coord C2 exon
chr17:25503991-25504256
Length
120 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
GCATGATTATACTCTTCTAGGCA
3' ss Score
6.06
Exon sequences
Seq C1 exon
GCCCAGCCAATCAGCGAGTGGGCATCGTGGGAGGACATGAGGCTTCTGAGAGTAAGTGGCCCTGGCAGGTGAGCCTGAGATTTAAATTAAACTACTGGATACATTTCTGCGGAGGTTCTCTCATCCATCCACAGTGGGTGCTCACTGCGGCACACTGTGTGGGACC
Seq A exon
GTGAGTCTCCCTGGGCCTGGCATGGTTGGACGGGATCTAGATTATTCCCACCATCCCCAGTGTTCCCGAGGATGTGCCCATCCTGACTGGAGCCTTCTGAGCATGATTATACTCTTCTAG
Seq C2 exon
GCACATCAAAAGCCCACAGCTCTTCCGGGTGCAGCTTCGTGAGCAGTATCTATACTATGGGGACCAGCTCCTCTCTTTGAACAGGATCGTGGTGCACCCCCACTATTACACGGCCGAGGGTGGGGCAGACGTTGCCCTGCTGGAGCTTGAGGTCCCTGTGAATGTCTCTACCCATCTCCACCCCATATCCCTGCCCCCTGCCTCGGAGACCTTCCCCCCAGGGACATCGTGCTGGGTGACAGGCTGGGGCGACATTGATAATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033825-Tpsb2:NM_010781:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=83.9)
A:
NA
C2:
PF0008921=Trypsin=FE(37.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGAGGTTCTCTCATCCAT
R:
GGGGTGGAGATGGGTAGAGAC
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: