MmuINT0164418 @ mm9
Intron Retention
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:23416310-23417458:+
Coord C1 exon
chr8:23416310-23416366
Coord A exon
chr8:23416367-23417407
Coord C2 exon
chr8:23417408-23417458
Length
1041 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTACTTTTCAATAATTTAGAGC
3' ss Score
6.32
Exon sequences
Seq C1 exon
TTTGTCATATCCAGATGAAATAAAATCAGCAAGTTATGCGGACCCCATCAGTACAAA
Seq A exon
GTGAGTTAAATATATATATACATGCATAAATATGTGACTATGTATATGCATATATAAATTTATATAATGACATGCACACTACACAAACACTGACCAATAAAAGACAAAAGTCAACCTTAAATGAAGGTTGAACAGGACATACGTTTCTCATCCCCTAAAGCGTAAGGAACGCTGAAGGAGAGTGGATAGAGAGAATGTGACGAAGGGCATGTGTGCTGTGCAGCCTAATCGTCAGGGTATGACATGGTGACATCACAGCCGCTGTCATTGCCTGCCTTGAGTCTGCATGAGTCTGTGCTTGAGAACGGTCATTCGTGGTGGGTGCAGGGGAAGAAGGGCTGTGAGGGCCTATGTTGTCTGTCGATAGCTGCTAGAAAAGGAGTCATGGCCATTGTCCACAGTTTGTGTGGCCACAGGGGAGAAACCTAGTACCCTGTTGGCTAGTCCCATACCCATGCCCACGTGGGTGGCCCTGATTAAACTCAATGTGTCACAGAACAAAAGCAAAGAGACACAGAAGTGGTAAGGGGCTTATCTGGGGAGAAGCACTTGGAGGGATGGAAATGGGAAAAGAGATGAGAGAGACCAGAATGCACTCTATACATATATGACATAGTCAAAGAATAAACCTAACTTTAAAAACAAAACAGGGAAGTTGAAGTCTATAAAGGTCTACCCTCAGTTATACATATGACAAAAACCAAGTGCATAGTTGCTATGTCTGTATAAATCACTCTCAGTGAGATGCTCTGGATGGGGAGGTGTCAGGATTTCTCACCCTAAATAACCAATACATTGGACATGATCTTATTTATTAAATGAGACACTAACAGTGTAGACTGAAGAGAGAGAGATTTCTAAGTTCTCCTGCGGTGCGAGGCTGGTGTGCCCACTGTTAGATTAGATGGAGCCACTGCCTTCCATCTACAGCCACTTCATCCTATCTCACGGGGAAGAGAGGAACACCAGGGTTGAAAGTCAGAAGGTAGAAGGCAGAGTCATATGCACTTTTTACTGACTATGTACTTTTCAATAATTTAG
Seq C2 exon
AGCATATACAAATGATTCGTCAGTATACGACCCTGGGGGAGCTTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-Tpte:NM_199257:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: