MmuINT0168753 @ mm10
Intron Retention
Gene
ENSMUSG00000026670 | Uap1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:MGI Symbol;Acc:MGI:1334459]
Coordinates
chr1:170150312-170151136:-
Coord C1 exon
chr1:170150943-170151136
Coord A exon
chr1:170150453-170150942
Coord C2 exon
chr1:170150312-170150452
Length
490 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGA
5' ss Score
4.72
3' ss Seq
TTCCCCCCTTTATTTCTTAGTGT
3' ss Score
10.1
Exon sequences
Seq C1 exon
GTGGTAGAGAAAACGAATCCCACAGAGCCAGTTGGAGTGGTTTGCCGGGTGGATGGAGTATACCAGGTGGTAGAATACAGCGAGATCTCTCTGGCAACAGCTCAAAGGCGAAGTTCAGATGGACGGCTGCTGTTCAATGCAGGGAACATTGCCAATCACTTCTTCACTGTCCCGTTCCTGAAAGATGTTGTCAA
Seq A exon
GTATGAACAAAATAGGGACCCTATTTATTATTATTATTATTATTATTATTGCTAATTAGAAATGTAACCTTTTAGGGAGCTGGGTAGAATTCCTAAACCTGCTCCATAGAACTCATGTGTTGTCTTGAGGATCGATGCTCTCAGAGGGAAAACTCACATCGTGATTGCTTTACCTGAGCTGTGTCGTTTTGTCAGGTGCTGGGTCTGCGAGGCAGGCTTTCCCTGGTGCTTGGTGCTTGGTCTTCCTGCCTCCAAGTGCTAGACGTATGCTGCTATGTCTAGAATTGTTTTCTTAATATAGAAATCATTATTTACATTTTCTAGGAGGAATCTAGATATATAATATTTACACATGGACTGAAACTTAATAAACGCTCTTCACTCGGATAGCTTCAGAGGTGCTTGTTGATACACATGTGCTTGAGTGTTTTCATTTTTTTTACATTTTGAATTGAAAAGTGATTATATCTTTCCCCCCTTTATTTCTTAG
Seq C2 exon
TGTTTATGAACCTCAGTTGCAGCACCATGTGGCTCAAAAGAAGATTCCATATGTGGACTCCCAGGGGCACTTCATTAAGCCAGACAAGCCAAATGGAATAAAGATGGAAAAATTTGTCTTTGACATCTTCCAGTTTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026670:ENSMUST00000111351:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(15.0=100)
A:
NA
C2:
PF0170413=UDPGP=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTAGAGAAAACGAATCCCACA
R:
TTGCAAACTGGAAGATGTCAAAGAC
Band lengths:
334-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types