MmuINT0170618 @ mm9
Intron Retention
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 homolog C (C. elegans)-like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48602902-48603867:+
Coord C1 exon
chr17:48602902-48602969
Coord A exon
chr17:48602970-48603766
Coord C2 exon
chr17:48603767-48603867
Length
797 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TGTCCCGGTTGGTGATTCAGGGC
3' ss Score
6.94
Exon sequences
Seq C1 exon
CCAATGGGAATGAAGAGTGCTCGGCATTAACCAATGAGATCATTGTCACCATGCACACCTTCCAGGAT
Seq A exon
GTGAGTTGTGCAGAGGCATTGAGGAAGGGCAGGGCCTTGGAAGGTCTAGGAAGGGGGATGGCTCTGGCACACATGGAGTAGGGTCCTAATTACAAAGCAAGGTAGTTAAAGAAGACTATTTATCATAGAGCTACCATGCCAGATCTTTGAAGGACTTAGACCACCAGCTGGCCCCCTAGCTACCCTCTATCCCTGAGCCCTTTCTATGGGTAGATGAATGCATCAGAAGGTTCAAAAGACTCAAATCTGACATTAACTCTTTCTTCCAACTTAGGACAGCTAGGGGGCATCTGGGAGACTTAGCCTCCTCCAGGGTGACCATCTCTATCTATCTTGGGGAGGGGGGTGATGAGAAGGAGGGCTTGAGCAGGTGGAAGGGGGGTATTATTTCCTCCTCCTTCCTCCCTCCCACAGCTTCAGGGAAGAGATGAACATGTCAGGTTTGAGAGTGTTTGGAAAACCAAAGTAGCGTGTTGGAAGCTGAGGGCAGGCAGCCTCACACTATCATTTGGGGAGGACAGCTGGAGGTCAGGCTTGGTTACTGGGTGGTGGCCTGTGTCTTCTTGTCTTCTGCCAGCCTAAGATGCACCATGTGTGGCTTTATTGTTCTCAGGGGCAAACCTGACTGTGGGGTTCTGGAGTCTGGGAGGCAGAGGGTCCAGGGTACTGGGTAGGGAGGGGGCTGTAGCTTCTGGTGATACAGGTTGCAAAAGAGTCATGAGGAATGGAGGGGGGCTGAGAGGAGGAGTTTCCCATGACCCCCCTGAGTGTGTTCCCTGTCCCGGTTGGTGATTCAG
Seq C2 exon
GGCTTGGAAACCAAATACGTTGAAATCCTCAGATTCCAGGCATCGGAGGAAGAGACCTGGGCAGTGCCCCCTCCTGTCTCCCAGCCACCCCTGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592-Unc5cl:NM_152823:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF129462=EGF_MSP1_1=PD(39.3=47.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: