MmuINT0174452 @ mm9
Intron Retention
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10727540-10728841:+
Coord C1 exon
chr19:10727540-10727625
Coord A exon
chr19:10727626-10728723
Coord C2 exon
chr19:10728724-10728841
Length
1098 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TGCTCTTCTCTCTCTTCCAGAAT
3' ss Score
12.87
Exon sequences
Seq C1 exon
GGAGATGCTATTTCCATGGCCGGTGGTACACGGATGGGGCTGTGTTCAGTGGGGGTGGTGACGACTGTACCACCTGTGTCTGCCAG
Seq A exon
GTAGGGTGTGAGGTTCCGGCACCTGTTGACTCAGTGGAAGATGGGAAAAGAGTTGGGTGGGAAGCATAGGAATTTACCCAGGATGCTTTGCTTGGGGAAGATAACCAGCTGTGTAGCAAAGGGCAGAGATTGAAGCAGTAGTCTCTAGAGGGATCTCCCATGCCTTACCAAAGTCTCCATGAGATCCAATCATTTGTCAGCTCTGTATTGGCAGAGCACTTACTGTGATCTGGGAACCTACATCCTCAGCCCAGAAGAGCACCGGTCCCCTCTGACTGGCAGCCTTTGGCCTAGATGGGCATGACTGGGCACGGGAACCCTTATTGAGAGGAGAGAGGGACAGTGGAGACCTGAGAGGTGACTAGGACCAGTCAGGTGAAATTCTGAGGGTGCTGTGCCCTCGGTTGAAGCAGAGAAGCCTGGAGGAAGGCGGGCTTTTCTGGAATGTGTCTTAGGAGGGCTTCCTAGGAGCAGGCTGGAAGAGGTGGTCGTTAGACAGTAATTTACTACCTTGTGAGTGTCCTCAGGAGAAATGGGAAGTAGTAGAGGGCAGAGGGGATGCTGGGAAGACTCTTTTCAGCTCATCCCATGGACCACTCGCATTGTGGAGAGAGTGCTAGTTTAGAGAAAGAGCTGGCCTCTCTCAGCTGTATATCGGACATGTCTGGGCATAAGGGGCCAAGCACTCTTGCTGTCTCAGGAGGGTATCTATGACTGATAAGTGGGAGGGGTCCCCAGGCAGCAGACCTGTGGACCAGGCTAAGCTGCTAAGGCTTGGAGCGGTGGATGGCAGGATGAGGATGATGCCTGGCCGTTTCCTAGCTGTGGAGCAGAGGCATGGGTGAGAGGGAGGAGAGAGTCTCGATGGAACTAGGTTTAAGAGGGAGGCTGAGAGACGGGAGAGACCCAGCTAGGACAGGAGGAACATCCCTGGACCTTCTTTCAACTCCCGGAAAGGACTCCCCCTTCTCTGCTCCTCTGTCTCCCTGGACACTCCTGTGTCTCTTTTACTTGAGGGTTTGGAGAATAGCTGCCAACCAGCCTTCTCTTCAATCCTCCGTGGCCCAGGGCTAATGCATGCTCTTCTCTCTCTTCCAG
Seq C2 exon
AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-Vwce:NM_027913:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(44.1=89.7)
A:
NA
C2:
PF0009313=VWC=PD(52.5=77.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTATTTCCATGGCCGGTG
R:
CTGTGGTGGGTGTGGGTTC
Band lengths:
200-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: