MmuINT0174463 @ mm10
Intron Retention
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10641626-10644263:+
Coord C1 exon
chr19:10641626-10641742
Coord A exon
chr19:10641743-10644146
Coord C2 exon
chr19:10644147-10644263
Length
2404 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTGTCTTCTGCTCTCACAGACA
3' ss Score
9.82
Exon sequences
Seq C1 exon
ACATTGACGAGTGTTTAAGCTCATCTTGTGAGGGTCACTGCGTGAACACAGAAGGTGGCTTCGTGTGTGAATGTGGGCCAGGCATGCAACTGTCTGCTGATCGTCACAGCTGCCAAG
Seq A exon
GTAAGTGGGTAGAGATGTTTGGAGTGGTTTCTATGCCCTGCCAGGTACCTTAAGATACATTCTCCAGCCATAGTCCTCTGTGAAGGATGCTGTGTCACTCCCGCTCTATTGGGGAAAACAAAAGCTTACTTGCATCCATTCTTTAGGAAGAGATAGAATTAGGCTTTGAATCCAGAATAGTGGACTCTTTGGTTTGTTCCTTAGAGACAGAATCTCCCTACACATCCGTGGCTGTCCTGGAACTATTACCACATTATCCTCAAACTCACAGAGACTCACCTGTCTGACTCCCAAGTGCTGGGATTAAGGGCATGTGCCACTGTGCCCATGCCCAGCATTCATGGTGGACTTGCTCTGTACTAAGACATTCTAAGCTCTTCTGCTTTTGTCATAGGGAAAGATGGGAATGAAGGAATGGTCTCAGGGAGAACAAGGGTCAGATGCACCCAGGGCAAGAGGTACCAAGATGGAGAAGGGAGAACTGCAGGCTGTGAGTGGTTCCATAGGGACTGTGAGAGGAGTCTGTGATGGTCTCTGTCACGTAGTGTGTAGTGTCTTCCTGCCCTGGTACTGGTCCAGGCACTGTGGGCATCTGTAGGACCCACCCTCCAGTCTGGTGGTTTGGGAAAGAAAATGAATGGGACAGGGAACTAGGGCTGTGGGTGCCCAGGGAGAAGAAGTCTTCCTTTGGTTTCTTTTCTGCAGATAAGAGTGTTATTGTGCAGCCCAGTCTGACTCTCACCTGTCACTCTCCTGCCTTTCCCTCTTGAGTACAAGGATTATATGCATACCCTGGCACACCCAACAGGGCCAGATCTTTTACGAGAGTCATCCTTTCCAAGTGACTTGGATTTACATAGGAGGTTTCTCATCACAGTCTCATGCAACAAGGCAGAGGAGACACGGGAAGTTTCACAAAACACGAGAAGCTTGAGTGCCATAGTGGGAATCTCTCCCCTCAGCATTCTCTACCTGCCCGAGAGGACCCTGCTTTCCTAGTCCGCCTGAGCTGCCCCTAATACAATGCTGCTTAGACCACGGGGATTTCTTCTCTCAGTCCCCGGACAGCCAAAGTCCAAGGTCAAGGTACTGACTGGCTTTGCTGTGGATTTCTCTGGCTTGAAGATGTGTCCTCACAAGATGGTAAGAGGGAGGGACAGAGGGTGCTCTGGTGATTCTTCTAAGGTCATTAATTCATCATTAAGGCCCCACCCTTGTGATGTCATCAAATCCTATCTCCCAAAGCCCTACTTCCAGAGTACCTTGGGAAGTTTGCTGTCAGCATGGATTTTCAGTCTAGATGCTCGAACTGCCTACCTCCCTTAACCATATGTTCTTCCATATGCATATATACAGTCATATCAATTACCAGACTCACAGGCTGGGTACCAGGCTAAGCACTTTCCACATGTCTTTTCACCCTATCTGCACAATTACTAAGTTGGTACTGTTTATCTCCATTACATTGATAAGGACACTGTGGCTTAACAAAGTTAAGTCATTTACCCACAATCACATCGGGGTTGGGAGTCTGATCCCAGTTTCTTCTCCAATTTTCTTTCCCACATCGGGCAGACAGACCTGATTTGTTATTTTAACTGTTGCTTGGTTCTCTGTGGGGCAAGTGTTCCATACTTTATGGGTTCTTCTGCTGATGAGTGGGGGGAGGGTGGGTTATTTCTAGTTTTCTTGCAGCTTCAGACAACGGCCTGGGTGATTCTCTTCATAAGAGGCTCTAAGGAAGAAGGTTTTAAAGTGTGCAGAATATTTCTTTTATATCCAGACAAGAGAGAAGGACATTCAGTGTAGACAGAGTTATGAGTCCAAGCGGAGTTCCTGTAAGAACAGGATGTGTTTGTTTAGAAGACGTGGGAAACTGAGCAAGCTCAGGGCTGAGAATGACTGCGTATACCTTTGTCTATGTTATTTCTTTATTTTTTTTCTGGCATTTAAGTGTGCCTGTGGGGGTCAGAGGACATCTTTTGGGAGCTCTTCCATCTCATGGGTCCCAGGGATTGTACAGGCTTTGAGGGAGGCACCTTTGCCTGCTGAGCCATTTCCCTGGCTCCCCCGGGACCATGTTTTAAGGTCCCATGAGTGAGTGCTGCTTATTGAGGGAGGGCCCTGAGAGGTTTGGAGCAGACTGTCCCATCGCAGGTGGCCTTAGGTGAGGACCTTCTGGAGATCATAGGAAGATGGTTCCAGAGAAAACAGAGTTAGAGGGCTCAGGGAGGCTGTGTCTGTTCCTCAGCCTAGAGACAAAGCAGCCGGCGCTGGGCTGAGACGGTGAGGGTGGAGACCATCAGCTGGTCCCCAGTGGCCCCGAGCTGGGTGAGAGAGAGGGATGAGAGGATTCCAAGTCCTGTGGAGAGATGGCTGCTAGCTTTGTCTTCTGCTCTCACAG
Seq C2 exon
ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789:ENSMUST00000055115:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types